miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16191 5' -58.6 NC_004065.1 + 89083 0.66 0.867352
Target:  5'- gUUCUCCCCGGUagccggcguccuggGCUCgGGAAcgUACu- -3'
miRNA:   3'- -AAGGGGGGCCG--------------CGAGgCCUUa-AUGuu -5'
16191 5' -58.6 NC_004065.1 + 154396 0.66 0.862215
Target:  5'- cUCCuCCCCGGCGgCUCCcucgcGGGAU--CAGg -3'
miRNA:   3'- aAGG-GGGGCCGC-GAGG-----CCUUAauGUU- -5'
16191 5' -58.6 NC_004065.1 + 80335 0.66 0.854709
Target:  5'- -gCCCCCCGGCGUUC--GAccUGCAGa -3'
miRNA:   3'- aaGGGGGGCCGCGAGgcCUuaAUGUU- -5'
16191 5' -58.6 NC_004065.1 + 109983 0.66 0.831068
Target:  5'- -aCgUCCUGGCGCUCUGGAcgcUGCGc -3'
miRNA:   3'- aaGgGGGGCCGCGAGGCCUua-AUGUu -5'
16191 5' -58.6 NC_004065.1 + 161505 0.67 0.814436
Target:  5'- -cCUCCUCGGC-CUCCGGGAgaUGCGu -3'
miRNA:   3'- aaGGGGGGCCGcGAGGCCUUa-AUGUu -5'
16191 5' -58.6 NC_004065.1 + 127125 0.67 0.788327
Target:  5'- cUCCCCCaucgcggcggCGGCGCUaCCGGcggcgGCGAu -3'
miRNA:   3'- aAGGGGG----------GCCGCGA-GGCCuuaa-UGUU- -5'
16191 5' -58.6 NC_004065.1 + 96151 0.67 0.779346
Target:  5'- gUUCCgCCCGGCGCgCCGuc-UUGCGAc -3'
miRNA:   3'- -AAGGgGGGCCGCGaGGCcuuAAUGUU- -5'
16191 5' -58.6 NC_004065.1 + 181725 0.68 0.732729
Target:  5'- aUCCCUUCGGCGCcaucUUCGGA--UACGAc -3'
miRNA:   3'- aAGGGGGGCCGCG----AGGCCUuaAUGUU- -5'
16191 5' -58.6 NC_004065.1 + 40252 0.69 0.703696
Target:  5'- aUCCCCCCgggguuucuggGGCGCcccgCCGGG--UACGAa -3'
miRNA:   3'- aAGGGGGG-----------CCGCGa---GGCCUuaAUGUU- -5'
16191 5' -58.6 NC_004065.1 + 83213 0.7 0.654268
Target:  5'- -gUCCCCCGuGCGCgccgCCGGGAggaGCAu -3'
miRNA:   3'- aaGGGGGGC-CGCGa---GGCCUUaa-UGUu -5'
16191 5' -58.6 NC_004065.1 + 190122 1.04 0.004667
Target:  5'- aUUCCCCCCGGCGCUCCGGAAUUACAAa -3'
miRNA:   3'- -AAGGGGGGCCGCGAGGCCUUAAUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.