miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16192 3' -57.5 NC_004065.1 + 129682 0.66 0.942488
Target:  5'- uCCGCGCuauACGCCAggGCGUcuUCGAUu -3'
miRNA:   3'- -GGCGCGcacUGUGGUagCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 179575 0.66 0.942488
Target:  5'- gCUGgGCGcugaaggGGCGCCA-CGCGUgugCGACc -3'
miRNA:   3'- -GGCgCGCa------CUGUGGUaGCGCGa--GCUG- -5'
16192 3' -57.5 NC_004065.1 + 88439 0.66 0.942488
Target:  5'- gCCGuCGCGUugGugGCgGUCGC-CUCGcGCa -3'
miRNA:   3'- -GGC-GCGCA--CugUGgUAGCGcGAGC-UG- -5'
16192 3' -57.5 NC_004065.1 + 192312 0.66 0.942488
Target:  5'- aCGCGCGUGuccggGCACgA-CGCGUcgaUCGAg -3'
miRNA:   3'- gGCGCGCAC-----UGUGgUaGCGCG---AGCUg -5'
16192 3' -57.5 NC_004065.1 + 153951 0.66 0.942488
Target:  5'- aCCGCGgagccugcgacuUGUcuGCGCCGUCGCGgUCGuCg -3'
miRNA:   3'- -GGCGC------------GCAc-UGUGGUAGCGCgAGCuG- -5'
16192 3' -57.5 NC_004065.1 + 186961 0.66 0.942488
Target:  5'- aCGUGCGgu---CUGUCGCGC-CGACg -3'
miRNA:   3'- gGCGCGCacuguGGUAGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 33924 0.66 0.942488
Target:  5'- gCCGUugGCGUGGCgaGCCG-CGCGUUCu-- -3'
miRNA:   3'- -GGCG--CGCACUG--UGGUaGCGCGAGcug -5'
16192 3' -57.5 NC_004065.1 + 90468 0.66 0.942488
Target:  5'- uCUGCGCGcauucucgGAUACuCGcUCGCGuCUUGGCg -3'
miRNA:   3'- -GGCGCGCa-------CUGUG-GU-AGCGC-GAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 67564 0.66 0.942051
Target:  5'- gCCGCGCGaGGCcuucGCCGaaGCGCaggggccUCGGCu -3'
miRNA:   3'- -GGCGCGCaCUG----UGGUagCGCG-------AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 48608 0.66 0.941172
Target:  5'- gCUG-GCGaUGACACCGUCgacgagaaguauggGCGCgaccagCGACg -3'
miRNA:   3'- -GGCgCGC-ACUGUGGUAG--------------CGCGa-----GCUG- -5'
16192 3' -57.5 NC_004065.1 + 194769 0.66 0.938027
Target:  5'- cUCGCGcCGUcccGAgACCggGUCGCGCagGGCg -3'
miRNA:   3'- -GGCGC-GCA---CUgUGG--UAGCGCGagCUG- -5'
16192 3' -57.5 NC_004065.1 + 33366 0.66 0.938027
Target:  5'- -gGCGUGagaGACGCCG-CGCGCUacUGGCc -3'
miRNA:   3'- ggCGCGCa--CUGUGGUaGCGCGA--GCUG- -5'
16192 3' -57.5 NC_004065.1 + 27196 0.66 0.938027
Target:  5'- cCCGCgaGCGUcauGGCgGCgGUCGUGgUCGGCa -3'
miRNA:   3'- -GGCG--CGCA---CUG-UGgUAGCGCgAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 60713 0.66 0.938027
Target:  5'- gCGCGCGgGACuuaCAaCGCGCU-GGCg -3'
miRNA:   3'- gGCGCGCaCUGug-GUaGCGCGAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 75871 0.66 0.935247
Target:  5'- uCCGCGCGUaGAU---GUCGCGCaggagggccugguacUCGGCc -3'
miRNA:   3'- -GGCGCGCA-CUGuggUAGCGCG---------------AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 65095 0.66 0.933351
Target:  5'- aCGCGUucaacgacuucuGUGugACCAUCGCGgaCa-- -3'
miRNA:   3'- gGCGCG------------CACugUGGUAGCGCgaGcug -5'
16192 3' -57.5 NC_004065.1 + 118500 0.66 0.933351
Target:  5'- gCUGCG-GUGGgGCCuGUCGCucggGUUCGGCa -3'
miRNA:   3'- -GGCGCgCACUgUGG-UAGCG----CGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 32743 0.66 0.933351
Target:  5'- gUCGCGCGaGAagcCGCCcaUGCGCUCGuaGCg -3'
miRNA:   3'- -GGCGCGCaCU---GUGGuaGCGCGAGC--UG- -5'
16192 3' -57.5 NC_004065.1 + 100708 0.66 0.933351
Target:  5'- gUCGCG-GUGGaagaguagccCACCAUCGUG-UCGGCu -3'
miRNA:   3'- -GGCGCgCACU----------GUGGUAGCGCgAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 105287 0.66 0.933351
Target:  5'- gCCGUGC-UGAacaACCA-CGCGUgCGGCg -3'
miRNA:   3'- -GGCGCGcACUg--UGGUaGCGCGaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.