miRNA display CGI


Results 1 - 20 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16192 3' -57.5 NC_004065.1 + 32743 0.66 0.933351
Target:  5'- gUCGCGCGaGAagcCGCCcaUGCGCUCGuaGCg -3'
miRNA:   3'- -GGCGCGCaCU---GUGGuaGCGCGAGC--UG- -5'
16192 3' -57.5 NC_004065.1 + 198008 0.66 0.917478
Target:  5'- aCUGCGCGaUGGCcucggagGCgGUCGCGgUCGcCg -3'
miRNA:   3'- -GGCGCGC-ACUG-------UGgUAGCGCgAGCuG- -5'
16192 3' -57.5 NC_004065.1 + 88439 0.66 0.942488
Target:  5'- gCCGuCGCGUugGugGCgGUCGC-CUCGcGCa -3'
miRNA:   3'- -GGC-GCGCA--CugUGgUAGCGcGAGC-UG- -5'
16192 3' -57.5 NC_004065.1 + 69408 0.66 0.923349
Target:  5'- gCUGC-CGacggGGCGCCAggugCGCGC-CGACc -3'
miRNA:   3'- -GGCGcGCa---CUGUGGUa---GCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 108010 0.66 0.931906
Target:  5'- gCCGCGUGaGACACCGucugguuagaggauUCGUcguGC-CGGCa -3'
miRNA:   3'- -GGCGCGCaCUGUGGU--------------AGCG---CGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 100708 0.66 0.933351
Target:  5'- gUCGCG-GUGGaagaguagccCACCAUCGUG-UCGGCu -3'
miRNA:   3'- -GGCGCgCACU----------GUGGUAGCGCgAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 32525 0.66 0.923349
Target:  5'- aCgGCGCccauccugaUGACGgccCCGUCGCGC-CGGCg -3'
miRNA:   3'- -GgCGCGc--------ACUGU---GGUAGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 118500 0.66 0.933351
Target:  5'- gCUGCG-GUGGgGCCuGUCGCucggGUUCGGCa -3'
miRNA:   3'- -GGCGCgCACUgUGG-UAGCG----CGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 64887 0.66 0.933351
Target:  5'- gCGCGCGUcggagaagagcGGCGCCAgUCGCcggGCggGACg -3'
miRNA:   3'- gGCGCGCA-----------CUGUGGU-AGCG---CGagCUG- -5'
16192 3' -57.5 NC_004065.1 + 192312 0.66 0.942488
Target:  5'- aCGCGCGUGuccggGCACgA-CGCGUcgaUCGAg -3'
miRNA:   3'- gGCGCGCAC-----UGUGgUaGCGCG---AGCUg -5'
16192 3' -57.5 NC_004065.1 + 33924 0.66 0.942488
Target:  5'- gCCGUugGCGUGGCgaGCCG-CGCGUUCu-- -3'
miRNA:   3'- -GGCG--CGCACUG--UGGUaGCGCGAGcug -5'
16192 3' -57.5 NC_004065.1 + 109542 0.66 0.928458
Target:  5'- cCCGgGCacGACACCGUCGUcagCGACc -3'
miRNA:   3'- -GGCgCGcaCUGUGGUAGCGcgaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 4190 0.66 0.928458
Target:  5'- -aGCGUGUGuccaugUACCGUCaugugGCGCUCGGu -3'
miRNA:   3'- ggCGCGCACu-----GUGGUAG-----CGCGAGCUg -5'
16192 3' -57.5 NC_004065.1 + 153951 0.66 0.942488
Target:  5'- aCCGCGgagccugcgacuUGUcuGCGCCGUCGCGgUCGuCg -3'
miRNA:   3'- -GGCGC------------GCAc-UGUGGUAGCGCgAGCuG- -5'
16192 3' -57.5 NC_004065.1 + 75871 0.66 0.935247
Target:  5'- uCCGCGCGUaGAU---GUCGCGCaggagggccugguacUCGGCc -3'
miRNA:   3'- -GGCGCGCA-CUGuggUAGCGCG---------------AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 48608 0.66 0.941172
Target:  5'- gCUG-GCGaUGACACCGUCgacgagaaguauggGCGCgaccagCGACg -3'
miRNA:   3'- -GGCgCGC-ACUGUGGUAG--------------CGCGa-----GCUG- -5'
16192 3' -57.5 NC_004065.1 + 129682 0.66 0.942488
Target:  5'- uCCGCGCuauACGCCAggGCGUcuUCGAUu -3'
miRNA:   3'- -GGCGCGcacUGUGGUagCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 229008 0.66 0.918022
Target:  5'- gCGCGCGgaGCGagAUCGCGCacUCGGCc -3'
miRNA:   3'- gGCGCGCacUGUggUAGCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 194769 0.66 0.938027
Target:  5'- cUCGCGcCGUcccGAgACCggGUCGCGCagGGCg -3'
miRNA:   3'- -GGCGC-GCA---CUgUGG--UAGCGCGagCUG- -5'
16192 3' -57.5 NC_004065.1 + 65095 0.66 0.933351
Target:  5'- aCGCGUucaacgacuucuGUGugACCAUCGCGgaCa-- -3'
miRNA:   3'- gGCGCG------------CACugUGGUAGCGCgaGcug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.