Results 21 - 40 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16192 | 3' | -57.5 | NC_004065.1 | + | 129682 | 0.66 | 0.942488 |
Target: 5'- uCCGCGCuauACGCCAggGCGUcuUCGAUu -3' miRNA: 3'- -GGCGCGcacUGUGGUagCGCG--AGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 88439 | 0.66 | 0.942488 |
Target: 5'- gCCGuCGCGUugGugGCgGUCGC-CUCGcGCa -3' miRNA: 3'- -GGC-GCGCA--CugUGgUAGCGcGAGC-UG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 109542 | 0.66 | 0.928458 |
Target: 5'- cCCGgGCacGACACCGUCGUcagCGACc -3' miRNA: 3'- -GGCgCGcaCUGUGGUAGCGcgaGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 4190 | 0.66 | 0.928458 |
Target: 5'- -aGCGUGUGuccaugUACCGUCaugugGCGCUCGGu -3' miRNA: 3'- ggCGCGCACu-----GUGGUAG-----CGCGAGCUg -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 32525 | 0.66 | 0.923349 |
Target: 5'- aCgGCGCccauccugaUGACGgccCCGUCGCGC-CGGCg -3' miRNA: 3'- -GgCGCGc--------ACUGU---GGUAGCGCGaGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 69408 | 0.66 | 0.923349 |
Target: 5'- gCUGC-CGacggGGCGCCAggugCGCGC-CGACc -3' miRNA: 3'- -GGCGcGCa---CUGUGGUa---GCGCGaGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 91187 | 0.66 | 0.918022 |
Target: 5'- gCCGCG-GaaGCGCCGUCGgCGUgcgCGGCa -3' miRNA: 3'- -GGCGCgCacUGUGGUAGC-GCGa--GCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 129711 | 0.66 | 0.928459 |
Target: 5'- aCGCgGUGUGGCugCGcgaagacaUCGCGgCUCGuGCg -3' miRNA: 3'- gGCG-CGCACUGugGU--------AGCGC-GAGC-UG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 229008 | 0.66 | 0.918022 |
Target: 5'- gCGCGCGgaGCGagAUCGCGCacUCGGCc -3' miRNA: 3'- gGCGCGCacUGUggUAGCGCG--AGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 661 | 0.66 | 0.933351 |
Target: 5'- gCCGCGCGUagcgaGCACCcgcUCGCuGgUCGAg -3' miRNA: 3'- -GGCGCGCAc----UGUGGu--AGCG-CgAGCUg -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 108010 | 0.66 | 0.931906 |
Target: 5'- gCCGCGUGaGACACCGucugguuagaggauUCGUcguGC-CGGCa -3' miRNA: 3'- -GGCGCGCaCUGUGGU--------------AGCG---CGaGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 100708 | 0.66 | 0.933351 |
Target: 5'- gUCGCG-GUGGaagaguagccCACCAUCGUG-UCGGCu -3' miRNA: 3'- -GGCGCgCACU----------GUGGUAGCGCgAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 33924 | 0.66 | 0.942488 |
Target: 5'- gCCGUugGCGUGGCgaGCCG-CGCGUUCu-- -3' miRNA: 3'- -GGCG--CGCACUG--UGGUaGCGCGAGcug -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 48608 | 0.66 | 0.941172 |
Target: 5'- gCUG-GCGaUGACACCGUCgacgagaaguauggGCGCgaccagCGACg -3' miRNA: 3'- -GGCgCGC-ACUGUGGUAG--------------CGCGa-----GCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 194769 | 0.66 | 0.938027 |
Target: 5'- cUCGCGcCGUcccGAgACCggGUCGCGCagGGCg -3' miRNA: 3'- -GGCGC-GCA---CUgUGG--UAGCGCGagCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 75871 | 0.66 | 0.935247 |
Target: 5'- uCCGCGCGUaGAU---GUCGCGCaggagggccugguacUCGGCc -3' miRNA: 3'- -GGCGCGCA-CUGuggUAGCGCG---------------AGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 64887 | 0.66 | 0.933351 |
Target: 5'- gCGCGCGUcggagaagagcGGCGCCAgUCGCcggGCggGACg -3' miRNA: 3'- gGCGCGCA-----------CUGUGGU-AGCG---CGagCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 118500 | 0.66 | 0.933351 |
Target: 5'- gCUGCG-GUGGgGCCuGUCGCucggGUUCGGCa -3' miRNA: 3'- -GGCGCgCACUgUGG-UAGCG----CGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 65095 | 0.66 | 0.933351 |
Target: 5'- aCGCGUucaacgacuucuGUGugACCAUCGCGgaCa-- -3' miRNA: 3'- gGCGCG------------CACugUGGUAGCGCgaGcug -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 32743 | 0.66 | 0.933351 |
Target: 5'- gUCGCGCGaGAagcCGCCcaUGCGCUCGuaGCg -3' miRNA: 3'- -GGCGCGCaCU---GUGGuaGCGCGAGC--UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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