miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16192 3' -57.5 NC_004065.1 + 99157 0.66 0.923349
Target:  5'- gCCgGCGCccgaGGCuggucuCCAguUCGCGCUCGAUg -3'
miRNA:   3'- -GG-CGCGca--CUGu-----GGU--AGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 137482 0.67 0.900751
Target:  5'- gCGCGCGUGcgcGCGCCcgcccgcccGUaCGCGCgcgCGAg -3'
miRNA:   3'- gGCGCGCAC---UGUGG---------UA-GCGCGa--GCUg -5'
16192 3' -57.5 NC_004065.1 + 200014 0.67 0.906722
Target:  5'- aCCGCGcCG-GugACgGUCGCGCagccucuggCGAUa -3'
miRNA:   3'- -GGCGC-GCaCugUGgUAGCGCGa--------GCUG- -5'
16192 3' -57.5 NC_004065.1 + 209294 0.67 0.894569
Target:  5'- cUCGC-CGUGAuCGCCGUCGuCGCcgUCGGu -3'
miRNA:   3'- -GGCGcGCACU-GUGGUAGC-GCG--AGCUg -5'
16192 3' -57.5 NC_004065.1 + 26732 0.67 0.900751
Target:  5'- uUCGCGCGacgauucgcGACACguCGUCGUGgaCGACg -3'
miRNA:   3'- -GGCGCGCa--------CUGUG--GUAGCGCgaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 22088 0.67 0.912479
Target:  5'- cCCGCGCGcuccGAagAUCAUaUGCGCgUCGACg -3'
miRNA:   3'- -GGCGCGCa---CUg-UGGUA-GCGCG-AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 103753 0.67 0.888178
Target:  5'- uUCGCGCGgcggGGCcuccggACCGUCGCGCa---- -3'
miRNA:   3'- -GGCGCGCa---CUG------UGGUAGCGCGagcug -5'
16192 3' -57.5 NC_004065.1 + 54663 0.67 0.894568
Target:  5'- gCCGCagauuCGUGAcCACCAgUCGCGUggUGGCa -3'
miRNA:   3'- -GGCGc----GCACU-GUGGU-AGCGCGa-GCUG- -5'
16192 3' -57.5 NC_004065.1 + 169567 0.67 0.894568
Target:  5'- uCUGCGCGcUGuugcCGCUGUCGCgGCUcCGGCc -3'
miRNA:   3'- -GGCGCGC-ACu---GUGGUAGCG-CGA-GCUG- -5'
16192 3' -57.5 NC_004065.1 + 29916 0.67 0.894568
Target:  5'- cCCGCGCGaagu-CC-UCGgGCUCGAUa -3'
miRNA:   3'- -GGCGCGCacuguGGuAGCgCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 114460 0.67 0.900751
Target:  5'- aCCGC-CGUcuCACCAUCGCgGCggUGGCg -3'
miRNA:   3'- -GGCGcGCAcuGUGGUAGCG-CGa-GCUG- -5'
16192 3' -57.5 NC_004065.1 + 97931 0.67 0.906722
Target:  5'- gCCGCGCGUccGGCACCggCGUgGCagCGGu -3'
miRNA:   3'- -GGCGCGCA--CUGUGGuaGCG-CGa-GCUg -5'
16192 3' -57.5 NC_004065.1 + 85542 0.67 0.906722
Target:  5'- uUCGUGaagacGGCGCaCGUCGUGUUCGGCg -3'
miRNA:   3'- -GGCGCgca--CUGUG-GUAGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 109405 0.67 0.903165
Target:  5'- gCCGCgGCG-GACGCCAcgagcuacucgauccUCGUGCaccCGGCc -3'
miRNA:   3'- -GGCG-CGCaCUGUGGU---------------AGCGCGa--GCUG- -5'
16192 3' -57.5 NC_004065.1 + 67415 0.67 0.912479
Target:  5'- -gGCGCGgggGGCgACCuaCGUGUUCGACc -3'
miRNA:   3'- ggCGCGCa--CUG-UGGuaGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 91250 0.67 0.912479
Target:  5'- -aGCGgGaccuUGACGCCAUCgaccGCGC-CGACc -3'
miRNA:   3'- ggCGCgC----ACUGUGGUAG----CGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 126569 0.67 0.912479
Target:  5'- -gGCGCGUGGCGCagcagcaCGCGCagGAa -3'
miRNA:   3'- ggCGCGCACUGUGgua----GCGCGagCUg -5'
16192 3' -57.5 NC_004065.1 + 36215 0.67 0.912479
Target:  5'- gCCGCacCGUGGuCGCCcuuucuuUUGCGCUUGGCc -3'
miRNA:   3'- -GGCGc-GCACU-GUGGu------AGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 109919 0.67 0.912479
Target:  5'- uCCGcCGCG-GcCGCCGUCGCGUccCGGg -3'
miRNA:   3'- -GGC-GCGCaCuGUGGUAGCGCGa-GCUg -5'
16192 3' -57.5 NC_004065.1 + 113924 0.67 0.912479
Target:  5'- aUCGCGCGUGuCGacgaCGcgGCGCUCGGg -3'
miRNA:   3'- -GGCGCGCACuGUg---GUagCGCGAGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.