miRNA display CGI


Results 61 - 80 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16192 3' -57.5 NC_004065.1 + 207540 0.67 0.900751
Target:  5'- gCCGCGCGcuccGCGUCGUCGCGCcUGAg -3'
miRNA:   3'- -GGCGCGCac--UGUGGUAGCGCGaGCUg -5'
16192 3' -57.5 NC_004065.1 + 67358 0.67 0.906721
Target:  5'- gCCGCuGCcgGUGuACAUCAUCGUGacggUCGGCg -3'
miRNA:   3'- -GGCG-CG--CAC-UGUGGUAGCGCg---AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 126569 0.67 0.912479
Target:  5'- -gGCGCGUGGCGCagcagcaCGCGCagGAa -3'
miRNA:   3'- ggCGCGCACUGUGgua----GCGCGagCUg -5'
16192 3' -57.5 NC_004065.1 + 36215 0.67 0.912479
Target:  5'- gCCGCacCGUGGuCGCCcuuucuuUUGCGCUUGGCc -3'
miRNA:   3'- -GGCGc-GCACU-GUGGu------AGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 109919 0.67 0.912479
Target:  5'- uCCGcCGCG-GcCGCCGUCGCGUccCGGg -3'
miRNA:   3'- -GGC-GCGCaCuGUGGUAGCGCGa-GCUg -5'
16192 3' -57.5 NC_004065.1 + 67415 0.67 0.912479
Target:  5'- -gGCGCGgggGGCgACCuaCGUGUUCGACc -3'
miRNA:   3'- ggCGCGCa--CUG-UGGuaGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 1160 0.67 0.912479
Target:  5'- gCCGCG-GUGGuCcCCAUUGUGUcgUCGGCg -3'
miRNA:   3'- -GGCGCgCACU-GuGGUAGCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 170451 0.67 0.910775
Target:  5'- gCCGC-CGgaGGCGCCuUCGCugccgccgcagaccGCUCGGCg -3'
miRNA:   3'- -GGCGcGCa-CUGUGGuAGCG--------------CGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 32947 0.67 0.906721
Target:  5'- cCCGCGCG-GAUGCgggCGUCGaCGUcgCGGCg -3'
miRNA:   3'- -GGCGCGCaCUGUG---GUAGC-GCGa-GCUG- -5'
16192 3' -57.5 NC_004065.1 + 113924 0.67 0.912479
Target:  5'- aUCGCGCGUGuCGacgaCGcgGCGCUCGGg -3'
miRNA:   3'- -GGCGCGCACuGUg---GUagCGCGAGCUg -5'
16192 3' -57.5 NC_004065.1 + 91619 0.67 0.906721
Target:  5'- aCCGCGCc--GCAgaaGUCGCGgUCGACg -3'
miRNA:   3'- -GGCGCGcacUGUgg-UAGCGCgAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 91250 0.67 0.912479
Target:  5'- -aGCGgGaccuUGACGCCAUCgaccGCGC-CGACc -3'
miRNA:   3'- ggCGCgC----ACUGUGGUAG----CGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 66650 0.68 0.853236
Target:  5'- uCgGCGCGgugGGCGCCcggcgaGUGUUCGACc -3'
miRNA:   3'- -GgCGCGCa--CUGUGGuag---CGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 197072 0.68 0.867794
Target:  5'- gCCGCGaCGUcGACGCCcgcaucCGCGCgggagcCGACc -3'
miRNA:   3'- -GGCGC-GCA-CUGUGGua----GCGCGa-----GCUG- -5'
16192 3' -57.5 NC_004065.1 + 70718 0.68 0.867794
Target:  5'- cCUGCGCacggacacggugGUGACGCugaacggcauCAUC-CGCUCGGCg -3'
miRNA:   3'- -GGCGCG------------CACUGUG----------GUAGcGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 92049 0.68 0.874787
Target:  5'- gCGCGCucgaGGCAUCucacgCGCGCUCGGa -3'
miRNA:   3'- gGCGCGca--CUGUGGua---GCGCGAGCUg -5'
16192 3' -57.5 NC_004065.1 + 110697 0.68 0.874787
Target:  5'- gUGUGaCGUGAgcCGCCGcCGCGaCUCGGCc -3'
miRNA:   3'- gGCGC-GCACU--GUGGUaGCGC-GAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 142406 0.68 0.881583
Target:  5'- cUCGCGCG-GGCcaucuuucgccuGCCggCGCGC-CGGCu -3'
miRNA:   3'- -GGCGCGCaCUG------------UGGuaGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 143468 0.68 0.881583
Target:  5'- uCUGCGUcgucGUGACGCCcgUGCGuCUgGAUc -3'
miRNA:   3'- -GGCGCG----CACUGUGGuaGCGC-GAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 105543 0.68 0.848724
Target:  5'- uCCGCGCGgcccugGAC-CCGgcgcagcggcacggCGCGCcgUCGGCg -3'
miRNA:   3'- -GGCGCGCa-----CUGuGGUa-------------GCGCG--AGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.