Results 81 - 100 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16192 | 3' | -57.5 | NC_004065.1 | + | 170865 | 0.68 | 0.867084 |
Target: 5'- gCCGCGCGcccgaucgGACucucgccgucgucGCC-UCGCGCUCG-Cu -3' miRNA: 3'- -GGCGCGCa-------CUG-------------UGGuAGCGCGAGCuG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 110697 | 0.68 | 0.874787 |
Target: 5'- gUGUGaCGUGAgcCGCCGcCGCGaCUCGGCc -3' miRNA: 3'- gGCGC-GCACU--GUGGUaGCGC-GAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 142406 | 0.68 | 0.881583 |
Target: 5'- cUCGCGCG-GGCcaucuuucgccuGCCggCGCGC-CGGCu -3' miRNA: 3'- -GGCGCGCaCUG------------UGGuaGCGCGaGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 143468 | 0.68 | 0.881583 |
Target: 5'- uCUGCGUcgucGUGACGCCcgUGCGuCUgGAUc -3' miRNA: 3'- -GGCGCG----CACUGUGGuaGCGC-GAgCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 80116 | 0.68 | 0.863505 |
Target: 5'- gCCGCGCGccccucauccaaccGGCACCcUCGgGUUCGGg -3' miRNA: 3'- -GGCGCGCa-------------CUGUGGuAGCgCGAGCUg -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 197072 | 0.68 | 0.867794 |
Target: 5'- gCCGCGaCGUcGACGCCcgcaucCGCGCgggagcCGACc -3' miRNA: 3'- -GGCGC-GCA-CUGUGGua----GCGCGa-----GCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 170304 | 0.68 | 0.874097 |
Target: 5'- uCCGCGaCG-GuCGCCGUgCGCcgcggccGCUCGGCg -3' miRNA: 3'- -GGCGC-GCaCuGUGGUA-GCG-------CGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 105543 | 0.68 | 0.848724 |
Target: 5'- uCCGCGCGgcccugGAC-CCGgcgcagcggcacggCGCGCcgUCGGCg -3' miRNA: 3'- -GGCGCGCa-----CUGuGGUa-------------GCGCG--AGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 153655 | 0.68 | 0.874787 |
Target: 5'- uCCGCG-GcGGCGCCggCGCGauggagaUCGACa -3' miRNA: 3'- -GGCGCgCaCUGUGGuaGCGCg------AGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 22502 | 0.68 | 0.874787 |
Target: 5'- gCGCGCGgcgagGAggaccgacgacCGCUAUCGCGCcgCGAg -3' miRNA: 3'- gGCGCGCa----CU-----------GUGGUAGCGCGa-GCUg -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 745 | 0.68 | 0.874787 |
Target: 5'- aCGCgaccaGCGUGcCGCgucgcggguUCGCGCUCGACc -3' miRNA: 3'- gGCG-----CGCACuGUGgu-------AGCGCGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 169680 | 0.68 | 0.881583 |
Target: 5'- aCCGUGC---GCACCAaCGCGUaCGGCg -3' miRNA: 3'- -GGCGCGcacUGUGGUaGCGCGaGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 204513 | 0.68 | 0.881583 |
Target: 5'- gCGCGCGcacggcGAgACCGUCGUGgUCGcCa -3' miRNA: 3'- gGCGCGCa-----CUgUGGUAGCGCgAGCuG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 163565 | 0.68 | 0.874787 |
Target: 5'- gCCGCGCGU-ACAgCuUCGUGaUCGACc -3' miRNA: 3'- -GGCGCGCAcUGUgGuAGCGCgAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 66650 | 0.68 | 0.853236 |
Target: 5'- uCgGCGCGgugGGCGCCcggcgaGUGUUCGACc -3' miRNA: 3'- -GgCGCGCa--CUGUGGuag---CGCGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 161098 | 0.69 | 0.83005 |
Target: 5'- uCCGCGCGcaacuucuUGAUcUC--CGCGCUCGGCg -3' miRNA: 3'- -GGCGCGC--------ACUGuGGuaGCGCGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 157109 | 0.69 | 0.835598 |
Target: 5'- gCCGCcgggggcgccuucaGCGggGGCAUCAUCGCGUUCa-- -3' miRNA: 3'- -GGCG--------------CGCa-CUGUGGUAGCGCGAGcug -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 92082 | 0.69 | 0.83795 |
Target: 5'- gCCGCGCGUuGCGCCAgcaGCuccgaGCcCGGCg -3' miRNA: 3'- -GGCGCGCAcUGUGGUag-CG-----CGaGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 163432 | 0.69 | 0.83795 |
Target: 5'- gCCGCG-GUGGcCGCCGcCGUGCagUCGGCc -3' miRNA: 3'- -GGCGCgCACU-GUGGUaGCGCG--AGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 229673 | 0.69 | 0.83005 |
Target: 5'- gUGgGCGUcggGGCGCgCGUC-CGCUCGGCg -3' miRNA: 3'- gGCgCGCA---CUGUG-GUAGcGCGAGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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