Results 101 - 120 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16192 | 3' | -57.5 | NC_004065.1 | + | 157109 | 0.69 | 0.835598 |
Target: 5'- gCCGCcgggggcgccuucaGCGggGGCAUCAUCGCGUUCa-- -3' miRNA: 3'- -GGCG--------------CGCa-CUGUGGUAGCGCGAGcug -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 168335 | 0.69 | 0.796884 |
Target: 5'- gCCGCGgaCGUGACGcgcugcggacCCcUCGCGCUCuACa -3' miRNA: 3'- -GGCGC--GCACUGU----------GGuAGCGCGAGcUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 65461 | 0.69 | 0.805396 |
Target: 5'- -aGCGCGaagcggucGGCGCCGcCGCcgGCUCGACa -3' miRNA: 3'- ggCGCGCa-------CUGUGGUaGCG--CGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 160280 | 0.69 | 0.805396 |
Target: 5'- uCCgGCGCGUGcuuCGCCAggaUCGUuucGUUCGGCg -3' miRNA: 3'- -GG-CGCGCACu--GUGGU---AGCG---CGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 79628 | 0.69 | 0.813767 |
Target: 5'- gCGCGCG-GACGCUGcgggCGUGCgugUCGGCg -3' miRNA: 3'- gGCGCGCaCUGUGGUa---GCGCG---AGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 96153 | 0.69 | 0.821987 |
Target: 5'- uCCGCcCGgcGCGCCGUCuuGCGaCUCGACg -3' miRNA: 3'- -GGCGcGCacUGUGGUAG--CGC-GAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 114972 | 0.69 | 0.821987 |
Target: 5'- cUCGCGC---GCGCCGUUGCcCUCGGCc -3' miRNA: 3'- -GGCGCGcacUGUGGUAGCGcGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 161098 | 0.69 | 0.83005 |
Target: 5'- uCCGCGCGcaacuucuUGAUcUC--CGCGCUCGGCg -3' miRNA: 3'- -GGCGCGC--------ACUGuGGuaGCGCGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 33621 | 0.69 | 0.796884 |
Target: 5'- gCCG-GCaUGGCcaagGCCAUCGCGUUCGGg -3' miRNA: 3'- -GGCgCGcACUG----UGGUAGCGCGAGCUg -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 142510 | 0.7 | 0.779461 |
Target: 5'- gCUGCGCGUcGACACCGUgucagcgaCGCGgUuucaCGACg -3' miRNA: 3'- -GGCGCGCA-CUGUGGUA--------GCGCgA----GCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 125647 | 0.7 | 0.761559 |
Target: 5'- gCCGcCGCGUGGCguguGCCAU-GUGCUCccuGACg -3' miRNA: 3'- -GGC-GCGCACUG----UGGUAgCGCGAG---CUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 88965 | 0.7 | 0.752448 |
Target: 5'- cUCGCGCGUGAUggugGCCAccuggggCGC-CUUGACg -3' miRNA: 3'- -GGCGCGCACUG----UGGUa------GCGcGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 225656 | 0.7 | 0.788236 |
Target: 5'- cCCGC-CGc--CGCCGUCGCGCUCcACg -3' miRNA: 3'- -GGCGcGCacuGUGGUAGCGCGAGcUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 101435 | 0.7 | 0.761559 |
Target: 5'- -gGCGCGUGcggauGCGCCuUCGCcGC-CGACg -3' miRNA: 3'- ggCGCGCAC-----UGUGGuAGCG-CGaGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 207609 | 0.7 | 0.761559 |
Target: 5'- aCGCGacuggaGACaaaGCCGUgGCGCUCGGCa -3' miRNA: 3'- gGCGCgca---CUG---UGGUAgCGCGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 163016 | 0.7 | 0.779461 |
Target: 5'- cCCGCGCGgGGC-CCGUacacggGCGC-CGACu -3' miRNA: 3'- -GGCGCGCaCUGuGGUAg-----CGCGaGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 170284 | 0.7 | 0.785616 |
Target: 5'- gCCaCGCGgucGGCACCAUCGcCGCcgggucgguaaacaUCGGCa -3' miRNA: 3'- -GGcGCGCa--CUGUGGUAGC-GCG--------------AGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 71488 | 0.7 | 0.788236 |
Target: 5'- gCGUGCGagagauGCGCCgGUCGCGCUCG-Ca -3' miRNA: 3'- gGCGCGCac----UGUGG-UAGCGCGAGCuG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 20005 | 0.7 | 0.788236 |
Target: 5'- gCCGCGUGUgGugAUguUCGUGCgacCGGCa -3' miRNA: 3'- -GGCGCGCA-CugUGguAGCGCGa--GCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 183825 | 0.7 | 0.787364 |
Target: 5'- uCCGCGCGguguuUGucguucggcccccACGCCGUCGCGUguUUGGCc -3' miRNA: 3'- -GGCGCGC-----AC-------------UGUGGUAGCGCG--AGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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