Results 41 - 60 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16192 | 3' | -57.5 | NC_004065.1 | + | 163432 | 0.69 | 0.83795 |
Target: 5'- gCCGCG-GUGGcCGCCGcCGUGCagUCGGCc -3' miRNA: 3'- -GGCGCgCACU-GUGGUaGCGCG--AGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 157109 | 0.69 | 0.835598 |
Target: 5'- gCCGCcgggggcgccuucaGCGggGGCAUCAUCGCGUUCa-- -3' miRNA: 3'- -GGCG--------------CGCa-CUGUGGUAGCGCGAGcug -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 35922 | 0.69 | 0.837951 |
Target: 5'- cCCGCG-GUcugcGACGCCucccuGUCGUGCUcCGACc -3' miRNA: 3'- -GGCGCgCA----CUGUGG-----UAGCGCGA-GCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 65461 | 0.69 | 0.805396 |
Target: 5'- -aGCGCGaagcggucGGCGCCGcCGCcgGCUCGACa -3' miRNA: 3'- ggCGCGCa-------CUGUGGUaGCG--CGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 92082 | 0.69 | 0.83795 |
Target: 5'- gCCGCGCGUuGCGCCAgcaGCuccgaGCcCGGCg -3' miRNA: 3'- -GGCGCGCAcUGUGGUag-CG-----CGaGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 79628 | 0.69 | 0.813767 |
Target: 5'- gCGCGCG-GACGCUGcgggCGUGCgugUCGGCg -3' miRNA: 3'- gGCGCGCaCUGUGGUa---GCGCG---AGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 161098 | 0.69 | 0.83005 |
Target: 5'- uCCGCGCGcaacuucuUGAUcUC--CGCGCUCGGCg -3' miRNA: 3'- -GGCGCGC--------ACUGuGGuaGCGCGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 168335 | 0.69 | 0.796884 |
Target: 5'- gCCGCGgaCGUGACGcgcugcggacCCcUCGCGCUCuACa -3' miRNA: 3'- -GGCGC--GCACUGU----------GGuAGCGCGAGcUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 114972 | 0.69 | 0.821987 |
Target: 5'- cUCGCGC---GCGCCGUUGCcCUCGGCc -3' miRNA: 3'- -GGCGCGcacUGUGGUAGCGcGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 33621 | 0.69 | 0.796884 |
Target: 5'- gCCG-GCaUGGCcaagGCCAUCGCGUUCGGg -3' miRNA: 3'- -GGCgCGcACUG----UGGUAGCGCGAGCUg -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 96153 | 0.69 | 0.821987 |
Target: 5'- uCCGCcCGgcGCGCCGUCuuGCGaCUCGACg -3' miRNA: 3'- -GGCGcGCacUGUGGUAG--CGC-GAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 160280 | 0.69 | 0.805396 |
Target: 5'- uCCgGCGCGUGcuuCGCCAggaUCGUuucGUUCGGCg -3' miRNA: 3'- -GG-CGCGCACu--GUGGU---AGCG---CGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 596 | 0.69 | 0.805396 |
Target: 5'- cCCGUG-GUGGCagACCAguuaCGCGCUCaGGCu -3' miRNA: 3'- -GGCGCgCACUG--UGGUa---GCGCGAG-CUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 143468 | 0.68 | 0.881583 |
Target: 5'- uCUGCGUcgucGUGACGCCcgUGCGuCUgGAUc -3' miRNA: 3'- -GGCGCG----CACUGUGGuaGCGC-GAgCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 142406 | 0.68 | 0.881583 |
Target: 5'- cUCGCGCG-GGCcaucuuucgccuGCCggCGCGC-CGGCu -3' miRNA: 3'- -GGCGCGCaCUG------------UGGuaGCGCGaGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 43105 | 0.68 | 0.845681 |
Target: 5'- uCCGCGacccGGCGCCGaucCGCGCUCG-Cg -3' miRNA: 3'- -GGCGCgca-CUGUGGUa--GCGCGAGCuG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 200529 | 0.68 | 0.867794 |
Target: 5'- gCCGCGCacagGGCGuCCAUgGCGagggCGACg -3' miRNA: 3'- -GGCGCGca--CUGU-GGUAgCGCga--GCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 70718 | 0.68 | 0.867794 |
Target: 5'- cCUGCGCacggacacggugGUGACGCugaacggcauCAUC-CGCUCGGCg -3' miRNA: 3'- -GGCGCG------------CACUGUG----------GUAGcGCGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 110697 | 0.68 | 0.874787 |
Target: 5'- gUGUGaCGUGAgcCGCCGcCGCGaCUCGGCc -3' miRNA: 3'- gGCGC-GCACU--GUGGUaGCGC-GAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 92049 | 0.68 | 0.874787 |
Target: 5'- gCGCGCucgaGGCAUCucacgCGCGCUCGGa -3' miRNA: 3'- gGCGCGca--CUGUGGua---GCGCGAGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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