miRNA display CGI


Results 81 - 100 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16192 3' -57.5 NC_004065.1 + 94419 0.67 0.892673
Target:  5'- aCC-CGCGUGACgGCCGUCucccagcggcgcguGUGUUCGAa -3'
miRNA:   3'- -GGcGCGCACUG-UGGUAG--------------CGCGAGCUg -5'
16192 3' -57.5 NC_004065.1 + 103455 0.67 0.888178
Target:  5'- cCUGCGCGUGcugcuGCGCCA-CGCGCcccCGuGCu -3'
miRNA:   3'- -GGCGCGCAC-----UGUGGUaGCGCGa--GC-UG- -5'
16192 3' -57.5 NC_004065.1 + 1160 0.67 0.912479
Target:  5'- gCCGCG-GUGGuCcCCAUUGUGUcgUCGGCg -3'
miRNA:   3'- -GGCGCgCACU-GuGGUAGCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 169567 0.67 0.894568
Target:  5'- uCUGCGCGcUGuugcCGCUGUCGCgGCUcCGGCc -3'
miRNA:   3'- -GGCGCGC-ACu---GUGGUAGCG-CGA-GCUG- -5'
16192 3' -57.5 NC_004065.1 + 29916 0.67 0.894568
Target:  5'- cCCGCGCGaagu-CC-UCGgGCUCGAUa -3'
miRNA:   3'- -GGCGCGCacuguGGuAGCgCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 114460 0.67 0.900751
Target:  5'- aCCGC-CGUcuCACCAUCGCgGCggUGGCg -3'
miRNA:   3'- -GGCGcGCAcuGUGGUAGCG-CGa-GCUG- -5'
16192 3' -57.5 NC_004065.1 + 22088 0.67 0.912479
Target:  5'- cCCGCGCGcuccGAagAUCAUaUGCGCgUCGACg -3'
miRNA:   3'- -GGCGCGCa---CUg-UGGUA-GCGCG-AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 113924 0.67 0.912479
Target:  5'- aUCGCGCGUGuCGacgaCGcgGCGCUCGGg -3'
miRNA:   3'- -GGCGCGCACuGUg---GUagCGCGAGCUg -5'
16192 3' -57.5 NC_004065.1 + 109919 0.67 0.912479
Target:  5'- uCCGcCGCG-GcCGCCGUCGCGUccCGGg -3'
miRNA:   3'- -GGC-GCGCaCuGUGGUAGCGCGa-GCUg -5'
16192 3' -57.5 NC_004065.1 + 36215 0.67 0.912479
Target:  5'- gCCGCacCGUGGuCGCCcuuucuuUUGCGCUUGGCc -3'
miRNA:   3'- -GGCGc-GCACU-GUGGu------AGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 126569 0.67 0.912479
Target:  5'- -gGCGCGUGGCGCagcagcaCGCGCagGAa -3'
miRNA:   3'- ggCGCGCACUGUGgua----GCGCGagCUg -5'
16192 3' -57.5 NC_004065.1 + 67415 0.67 0.912479
Target:  5'- -gGCGCGgggGGCgACCuaCGUGUUCGACc -3'
miRNA:   3'- ggCGCGCa--CUG-UGGuaGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 209294 0.67 0.894569
Target:  5'- cUCGC-CGUGAuCGCCGUCGuCGCcgUCGGu -3'
miRNA:   3'- -GGCGcGCACU-GUGGUAGC-GCG--AGCUg -5'
16192 3' -57.5 NC_004065.1 + 170451 0.67 0.910775
Target:  5'- gCCGC-CGgaGGCGCCuUCGCugccgccgcagaccGCUCGGCg -3'
miRNA:   3'- -GGCGcGCa-CUGUGGuAGCG--------------CGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 32947 0.67 0.906721
Target:  5'- cCCGCGCG-GAUGCgggCGUCGaCGUcgCGGCg -3'
miRNA:   3'- -GGCGCGCaCUGUG---GUAGC-GCGa-GCUG- -5'
16192 3' -57.5 NC_004065.1 + 91619 0.67 0.906721
Target:  5'- aCCGCGCc--GCAgaaGUCGCGgUCGACg -3'
miRNA:   3'- -GGCGCGcacUGUgg-UAGCGCgAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 67358 0.67 0.906721
Target:  5'- gCCGCuGCcgGUGuACAUCAUCGUGacggUCGGCg -3'
miRNA:   3'- -GGCG-CG--CAC-UGUGGUAGCGCg---AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 207540 0.67 0.900751
Target:  5'- gCCGCGCGcuccGCGUCGUCGCGCcUGAg -3'
miRNA:   3'- -GGCGCGCac--UGUGGUAGCGCGaGCUg -5'
16192 3' -57.5 NC_004065.1 + 26732 0.67 0.900751
Target:  5'- uUCGCGCGacgauucgcGACACguCGUCGUGgaCGACg -3'
miRNA:   3'- -GGCGCGCa--------CUGUG--GUAGCGCgaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 91250 0.67 0.912479
Target:  5'- -aGCGgGaccuUGACGCCAUCgaccGCGC-CGACc -3'
miRNA:   3'- ggCGCgC----ACUGUGGUAG----CGCGaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.