miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16192 3' -57.5 NC_004065.1 + 101575 0.71 0.696042
Target:  5'- aUCGCGCccgcgGACGCCuccgcCGCGCUCaGACu -3'
miRNA:   3'- -GGCGCGca---CUGUGGua---GCGCGAG-CUG- -5'
16192 3' -57.5 NC_004065.1 + 103540 0.71 0.696042
Target:  5'- aCGCGgGUGcagcGCGCCAacaUCGCGCagGGCu -3'
miRNA:   3'- gGCGCgCAC----UGUGGU---AGCGCGagCUG- -5'
16192 3' -57.5 NC_004065.1 + 111913 0.71 0.696042
Target:  5'- uCCGCGCGgcgacgagaGACGCCAugggcgccgccgUCGCGgUgGACg -3'
miRNA:   3'- -GGCGCGCa--------CUGUGGU------------AGCGCgAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 198957 0.71 0.70561
Target:  5'- gCCGCcaugaggaagGCGU-ACGCCGUCaacagacuccugGCGCUCGGCa -3'
miRNA:   3'- -GGCG----------CGCAcUGUGGUAG------------CGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 74717 0.71 0.713224
Target:  5'- -aGCGCG-GGCGCCugcgacaguaGCGUUCGACg -3'
miRNA:   3'- ggCGCGCaCUGUGGuag-------CGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 87696 0.71 0.72457
Target:  5'- gCCGCcgGCGUucGAgACC-UCGCGgUCGACg -3'
miRNA:   3'- -GGCG--CGCA--CUgUGGuAGCGCgAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 96969 0.71 0.733945
Target:  5'- gCCGCGCcUGcuGCGCCggccguccGUCGCGCUgcugCGACg -3'
miRNA:   3'- -GGCGCGcAC--UGUGG--------UAGCGCGA----GCUG- -5'
16192 3' -57.5 NC_004065.1 + 88965 0.7 0.752448
Target:  5'- cUCGCGCGUGAUggugGCCAccuggggCGC-CUUGACg -3'
miRNA:   3'- -GGCGCGCACUG----UGGUa------GCGcGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 125647 0.7 0.761559
Target:  5'- gCCGcCGCGUGGCguguGCCAU-GUGCUCccuGACg -3'
miRNA:   3'- -GGC-GCGCACUG----UGGUAgCGCGAG---CUG- -5'
16192 3' -57.5 NC_004065.1 + 101435 0.7 0.761559
Target:  5'- -gGCGCGUGcggauGCGCCuUCGCcGC-CGACg -3'
miRNA:   3'- ggCGCGCAC-----UGUGGuAGCG-CGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 207609 0.7 0.761559
Target:  5'- aCGCGacuggaGACaaaGCCGUgGCGCUCGGCa -3'
miRNA:   3'- gGCGCgca---CUG---UGGUAgCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 82583 0.7 0.770566
Target:  5'- cCCGCagaacucguugGCGUccauGACGCCGUCGUGCUgcugGACg -3'
miRNA:   3'- -GGCG-----------CGCA----CUGUGGUAGCGCGAg---CUG- -5'
16192 3' -57.5 NC_004065.1 + 163016 0.7 0.779461
Target:  5'- cCCGCGCGgGGC-CCGUacacggGCGC-CGACu -3'
miRNA:   3'- -GGCGCGCaCUGuGGUAg-----CGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 142510 0.7 0.779461
Target:  5'- gCUGCGCGUcGACACCGUgucagcgaCGCGgUuucaCGACg -3'
miRNA:   3'- -GGCGCGCA-CUGUGGUA--------GCGCgA----GCUG- -5'
16192 3' -57.5 NC_004065.1 + 170284 0.7 0.785616
Target:  5'- gCCaCGCGgucGGCACCAUCGcCGCcgggucgguaaacaUCGGCa -3'
miRNA:   3'- -GGcGCGCa--CUGUGGUAGC-GCG--------------AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 183825 0.7 0.787364
Target:  5'- uCCGCGCGguguuUGucguucggcccccACGCCGUCGCGUguUUGGCc -3'
miRNA:   3'- -GGCGCGC-----AC-------------UGUGGUAGCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 225656 0.7 0.788236
Target:  5'- cCCGC-CGc--CGCCGUCGCGCUCcACg -3'
miRNA:   3'- -GGCGcGCacuGUGGUAGCGCGAGcUG- -5'
16192 3' -57.5 NC_004065.1 + 20005 0.7 0.788236
Target:  5'- gCCGCGUGUgGugAUguUCGUGCgacCGGCa -3'
miRNA:   3'- -GGCGCGCA-CugUGguAGCGCGa--GCUG- -5'
16192 3' -57.5 NC_004065.1 + 71488 0.7 0.788236
Target:  5'- gCGUGCGagagauGCGCCgGUCGCGCUCG-Ca -3'
miRNA:   3'- gGCGCGCac----UGUGG-UAGCGCGAGCuG- -5'
16192 3' -57.5 NC_004065.1 + 33621 0.69 0.796884
Target:  5'- gCCG-GCaUGGCcaagGCCAUCGCGUUCGGg -3'
miRNA:   3'- -GGCgCGcACUG----UGGUAGCGCGAGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.