miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16192 3' -57.5 NC_004065.1 + 33621 0.69 0.796884
Target:  5'- gCCG-GCaUGGCcaagGCCAUCGCGUUCGGg -3'
miRNA:   3'- -GGCgCGcACUG----UGGUAGCGCGAGCUg -5'
16192 3' -57.5 NC_004065.1 + 65461 0.69 0.805396
Target:  5'- -aGCGCGaagcggucGGCGCCGcCGCcgGCUCGACa -3'
miRNA:   3'- ggCGCGCa-------CUGUGGUaGCG--CGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 160280 0.69 0.805396
Target:  5'- uCCgGCGCGUGcuuCGCCAggaUCGUuucGUUCGGCg -3'
miRNA:   3'- -GG-CGCGCACu--GUGGU---AGCG---CGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 596 0.69 0.805396
Target:  5'- cCCGUG-GUGGCagACCAguuaCGCGCUCaGGCu -3'
miRNA:   3'- -GGCGCgCACUG--UGGUa---GCGCGAG-CUG- -5'
16192 3' -57.5 NC_004065.1 + 79628 0.69 0.813767
Target:  5'- gCGCGCG-GACGCUGcgggCGUGCgugUCGGCg -3'
miRNA:   3'- gGCGCGCaCUGUGGUa---GCGCG---AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 114972 0.69 0.821987
Target:  5'- cUCGCGC---GCGCCGUUGCcCUCGGCc -3'
miRNA:   3'- -GGCGCGcacUGUGGUAGCGcGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 96153 0.69 0.821987
Target:  5'- uCCGCcCGgcGCGCCGUCuuGCGaCUCGACg -3'
miRNA:   3'- -GGCGcGCacUGUGGUAG--CGC-GAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 161098 0.69 0.83005
Target:  5'- uCCGCGCGcaacuucuUGAUcUC--CGCGCUCGGCg -3'
miRNA:   3'- -GGCGCGC--------ACUGuGGuaGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 229673 0.69 0.83005
Target:  5'- gUGgGCGUcggGGCGCgCGUC-CGCUCGGCg -3'
miRNA:   3'- gGCgCGCA---CUGUG-GUAGcGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 157109 0.69 0.835598
Target:  5'- gCCGCcgggggcgccuucaGCGggGGCAUCAUCGCGUUCa-- -3'
miRNA:   3'- -GGCG--------------CGCa-CUGUGGUAGCGCGAGcug -5'
16192 3' -57.5 NC_004065.1 + 92082 0.69 0.83795
Target:  5'- gCCGCGCGUuGCGCCAgcaGCuccgaGCcCGGCg -3'
miRNA:   3'- -GGCGCGCAcUGUGGUag-CG-----CGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 163432 0.69 0.83795
Target:  5'- gCCGCG-GUGGcCGCCGcCGUGCagUCGGCc -3'
miRNA:   3'- -GGCGCgCACU-GUGGUaGCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 35922 0.69 0.837951
Target:  5'- cCCGCG-GUcugcGACGCCucccuGUCGUGCUcCGACc -3'
miRNA:   3'- -GGCGCgCA----CUGUGG-----UAGCGCGA-GCUG- -5'
16192 3' -57.5 NC_004065.1 + 87635 0.68 0.845681
Target:  5'- cCCGCGCGa-GCGCgAacugCGCGCcuUCGACa -3'
miRNA:   3'- -GGCGCGCacUGUGgUa---GCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 43105 0.68 0.845681
Target:  5'- uCCGCGacccGGCGCCGaucCGCGCUCG-Cg -3'
miRNA:   3'- -GGCGCgca-CUGUGGUa--GCGCGAGCuG- -5'
16192 3' -57.5 NC_004065.1 + 105543 0.68 0.848724
Target:  5'- uCCGCGCGgcccugGAC-CCGgcgcagcggcacggCGCGCcgUCGGCg -3'
miRNA:   3'- -GGCGCGCa-----CUGuGGUa-------------GCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 66650 0.68 0.853236
Target:  5'- uCgGCGCGgugGGCGCCcggcgaGUGUUCGACc -3'
miRNA:   3'- -GgCGCGCa--CUGUGGuag---CGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 149421 0.68 0.860608
Target:  5'- aCCGC-CGUGaggaacgggaGCAgCA-CGCGCUCGAUc -3'
miRNA:   3'- -GGCGcGCAC----------UGUgGUaGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 80116 0.68 0.863505
Target:  5'- gCCGCGCGccccucauccaaccGGCACCcUCGgGUUCGGg -3'
miRNA:   3'- -GGCGCGCa-------------CUGUGGuAGCgCGAGCUg -5'
16192 3' -57.5 NC_004065.1 + 151085 0.68 0.867084
Target:  5'- cCUGCGCGggccuggUGGCGCC--CGaGCUCGGCg -3'
miRNA:   3'- -GGCGCGC-------ACUGUGGuaGCgCGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.