miRNA display CGI


Results 61 - 80 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16192 3' -57.5 NC_004065.1 + 151085 0.68 0.867084
Target:  5'- cCUGCGCGggccuggUGGCGCC--CGaGCUCGGCg -3'
miRNA:   3'- -GGCGCGC-------ACUGUGGuaGCgCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 200529 0.68 0.867794
Target:  5'- gCCGCGCacagGGCGuCCAUgGCGagggCGACg -3'
miRNA:   3'- -GGCGCGca--CUGU-GGUAgCGCga--GCUG- -5'
16192 3' -57.5 NC_004065.1 + 197072 0.68 0.867794
Target:  5'- gCCGCGaCGUcGACGCCcgcaucCGCGCgggagcCGACc -3'
miRNA:   3'- -GGCGC-GCA-CUGUGGua----GCGCGa-----GCUG- -5'
16192 3' -57.5 NC_004065.1 + 70718 0.68 0.867794
Target:  5'- cCUGCGCacggacacggugGUGACGCugaacggcauCAUC-CGCUCGGCg -3'
miRNA:   3'- -GGCGCG------------CACUGUG----------GUAGcGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 170304 0.68 0.874097
Target:  5'- uCCGCGaCG-GuCGCCGUgCGCcgcggccGCUCGGCg -3'
miRNA:   3'- -GGCGC-GCaCuGUGGUA-GCG-------CGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 92049 0.68 0.874787
Target:  5'- gCGCGCucgaGGCAUCucacgCGCGCUCGGa -3'
miRNA:   3'- gGCGCGca--CUGUGGua---GCGCGAGCUg -5'
16192 3' -57.5 NC_004065.1 + 22502 0.68 0.874787
Target:  5'- gCGCGCGgcgagGAggaccgacgacCGCUAUCGCGCcgCGAg -3'
miRNA:   3'- gGCGCGCa----CU-----------GUGGUAGCGCGa-GCUg -5'
16192 3' -57.5 NC_004065.1 + 110697 0.68 0.874787
Target:  5'- gUGUGaCGUGAgcCGCCGcCGCGaCUCGGCc -3'
miRNA:   3'- gGCGC-GCACU--GUGGUaGCGC-GAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 153655 0.68 0.874787
Target:  5'- uCCGCG-GcGGCGCCggCGCGauggagaUCGACa -3'
miRNA:   3'- -GGCGCgCaCUGUGGuaGCGCg------AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 163565 0.68 0.874787
Target:  5'- gCCGCGCGU-ACAgCuUCGUGaUCGACc -3'
miRNA:   3'- -GGCGCGCAcUGUgGuAGCGCgAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 88474 0.68 0.874787
Target:  5'- uUGCGCGcGACGCCGaagagCGCGUccUCGGa -3'
miRNA:   3'- gGCGCGCaCUGUGGUa----GCGCG--AGCUg -5'
16192 3' -57.5 NC_004065.1 + 745 0.68 0.874787
Target:  5'- aCGCgaccaGCGUGcCGCgucgcggguUCGCGCUCGACc -3'
miRNA:   3'- gGCG-----CGCACuGUGgu-------AGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 204513 0.68 0.881583
Target:  5'- gCGCGCGcacggcGAgACCGUCGUGgUCGcCa -3'
miRNA:   3'- gGCGCGCa-----CUgUGGUAGCGCgAGCuG- -5'
16192 3' -57.5 NC_004065.1 + 169680 0.68 0.881583
Target:  5'- aCCGUGC---GCACCAaCGCGUaCGGCg -3'
miRNA:   3'- -GGCGCGcacUGUGGUaGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 142406 0.68 0.881583
Target:  5'- cUCGCGCG-GGCcaucuuucgccuGCCggCGCGC-CGGCu -3'
miRNA:   3'- -GGCGCGCaCUG------------UGGuaGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 143468 0.68 0.881583
Target:  5'- uCUGCGUcgucGUGACGCCcgUGCGuCUgGAUc -3'
miRNA:   3'- -GGCGCG----CACUGUGGuaGCGC-GAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 103455 0.67 0.888178
Target:  5'- cCUGCGCGUGcugcuGCGCCA-CGCGCcccCGuGCu -3'
miRNA:   3'- -GGCGCGCAC-----UGUGGUaGCGCGa--GC-UG- -5'
16192 3' -57.5 NC_004065.1 + 103753 0.67 0.888178
Target:  5'- uUCGCGCGgcggGGCcuccggACCGUCGCGCa---- -3'
miRNA:   3'- -GGCGCGCa---CUG------UGGUAGCGCGagcug -5'
16192 3' -57.5 NC_004065.1 + 12623 0.67 0.888178
Target:  5'- -aGCGCGUcGAgA-CGUCGCGgUUCGACa -3'
miRNA:   3'- ggCGCGCA-CUgUgGUAGCGC-GAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 94419 0.67 0.892673
Target:  5'- aCC-CGCGUGACgGCCGUCucccagcggcgcguGUGUUCGAa -3'
miRNA:   3'- -GGcGCGCACUG-UGGUAG--------------CGCGAGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.