Results 81 - 100 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16192 | 3' | -57.5 | NC_004065.1 | + | 54663 | 0.67 | 0.894568 |
Target: 5'- gCCGCagauuCGUGAcCACCAgUCGCGUggUGGCa -3' miRNA: 3'- -GGCGc----GCACU-GUGGU-AGCGCGa-GCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 169567 | 0.67 | 0.894568 |
Target: 5'- uCUGCGCGcUGuugcCGCUGUCGCgGCUcCGGCc -3' miRNA: 3'- -GGCGCGC-ACu---GUGGUAGCG-CGA-GCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 29916 | 0.67 | 0.894568 |
Target: 5'- cCCGCGCGaagu-CC-UCGgGCUCGAUa -3' miRNA: 3'- -GGCGCGCacuguGGuAGCgCGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 176768 | 0.67 | 0.894569 |
Target: 5'- aCGUGaauuCGUucGACACgAUCGCGC-CGGCg -3' miRNA: 3'- gGCGC----GCA--CUGUGgUAGCGCGaGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 209294 | 0.67 | 0.894569 |
Target: 5'- cUCGC-CGUGAuCGCCGUCGuCGCcgUCGGu -3' miRNA: 3'- -GGCGcGCACU-GUGGUAGC-GCG--AGCUg -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 197162 | 0.67 | 0.894569 |
Target: 5'- -aGCGCGaccUGuccauCGCCAaCGCGCUgGACc -3' miRNA: 3'- ggCGCGC---ACu----GUGGUaGCGCGAgCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 22665 | 0.67 | 0.900751 |
Target: 5'- aCCGgaugcCGCGUGACACCcgCucCGCUUaGACu -3' miRNA: 3'- -GGC-----GCGCACUGUGGuaGc-GCGAG-CUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 26732 | 0.67 | 0.900751 |
Target: 5'- uUCGCGCGacgauucgcGACACguCGUCGUGgaCGACg -3' miRNA: 3'- -GGCGCGCa--------CUGUG--GUAGCGCgaGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 207540 | 0.67 | 0.900751 |
Target: 5'- gCCGCGCGcuccGCGUCGUCGCGCcUGAg -3' miRNA: 3'- -GGCGCGCac--UGUGGUAGCGCGaGCUg -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 137482 | 0.67 | 0.900751 |
Target: 5'- gCGCGCGUGcgcGCGCCcgcccgcccGUaCGCGCgcgCGAg -3' miRNA: 3'- gGCGCGCAC---UGUGG---------UA-GCGCGa--GCUg -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 114460 | 0.67 | 0.900751 |
Target: 5'- aCCGC-CGUcuCACCAUCGCgGCggUGGCg -3' miRNA: 3'- -GGCGcGCAcuGUGGUAGCG-CGa-GCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 109405 | 0.67 | 0.903165 |
Target: 5'- gCCGCgGCG-GACGCCAcgagcuacucgauccUCGUGCaccCGGCc -3' miRNA: 3'- -GGCG-CGCaCUGUGGU---------------AGCGCGa--GCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 32947 | 0.67 | 0.906721 |
Target: 5'- cCCGCGCG-GAUGCgggCGUCGaCGUcgCGGCg -3' miRNA: 3'- -GGCGCGCaCUGUG---GUAGC-GCGa-GCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 91619 | 0.67 | 0.906721 |
Target: 5'- aCCGCGCc--GCAgaaGUCGCGgUCGACg -3' miRNA: 3'- -GGCGCGcacUGUgg-UAGCGCgAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 67358 | 0.67 | 0.906721 |
Target: 5'- gCCGCuGCcgGUGuACAUCAUCGUGacggUCGGCg -3' miRNA: 3'- -GGCG-CG--CAC-UGUGGUAGCGCg---AGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 200014 | 0.67 | 0.906722 |
Target: 5'- aCCGCGcCG-GugACgGUCGCGCagccucuggCGAUa -3' miRNA: 3'- -GGCGC-GCaCugUGgUAGCGCGa--------GCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 97931 | 0.67 | 0.906722 |
Target: 5'- gCCGCGCGUccGGCACCggCGUgGCagCGGu -3' miRNA: 3'- -GGCGCGCA--CUGUGGuaGCG-CGa-GCUg -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 85542 | 0.67 | 0.906722 |
Target: 5'- uUCGUGaagacGGCGCaCGUCGUGUUCGGCg -3' miRNA: 3'- -GGCGCgca--CUGUG-GUAGCGCGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 170451 | 0.67 | 0.910775 |
Target: 5'- gCCGC-CGgaGGCGCCuUCGCugccgccgcagaccGCUCGGCg -3' miRNA: 3'- -GGCGcGCa-CUGUGGuAGCG--------------CGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 126569 | 0.67 | 0.912479 |
Target: 5'- -gGCGCGUGGCGCagcagcaCGCGCagGAa -3' miRNA: 3'- ggCGCGCACUGUGgua----GCGCGagCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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