miRNA display CGI


Results 101 - 120 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16192 3' -57.5 NC_004065.1 + 67415 0.67 0.912479
Target:  5'- -gGCGCGgggGGCgACCuaCGUGUUCGACc -3'
miRNA:   3'- ggCGCGCa--CUG-UGGuaGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 22088 0.67 0.912479
Target:  5'- cCCGCGCGcuccGAagAUCAUaUGCGCgUCGACg -3'
miRNA:   3'- -GGCGCGCa---CUg-UGGUA-GCGCG-AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 113924 0.67 0.912479
Target:  5'- aUCGCGCGUGuCGacgaCGcgGCGCUCGGg -3'
miRNA:   3'- -GGCGCGCACuGUg---GUagCGCGAGCUg -5'
16192 3' -57.5 NC_004065.1 + 109919 0.67 0.912479
Target:  5'- uCCGcCGCG-GcCGCCGUCGCGUccCGGg -3'
miRNA:   3'- -GGC-GCGCaCuGUGGUAGCGCGa-GCUg -5'
16192 3' -57.5 NC_004065.1 + 36215 0.67 0.912479
Target:  5'- gCCGCacCGUGGuCGCCcuuucuuUUGCGCUUGGCc -3'
miRNA:   3'- -GGCGc-GCACU-GUGGu------AGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 91250 0.67 0.912479
Target:  5'- -aGCGgGaccuUGACGCCAUCgaccGCGC-CGACc -3'
miRNA:   3'- ggCGCgC----ACUGUGGUAG----CGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 126569 0.67 0.912479
Target:  5'- -gGCGCGUGGCGCagcagcaCGCGCagGAa -3'
miRNA:   3'- ggCGCGCACUGUGgua----GCGCGagCUg -5'
16192 3' -57.5 NC_004065.1 + 198008 0.66 0.917478
Target:  5'- aCUGCGCGaUGGCcucggagGCgGUCGCGgUCGcCg -3'
miRNA:   3'- -GGCGCGC-ACUG-------UGgUAGCGCgAGCuG- -5'
16192 3' -57.5 NC_004065.1 + 34508 0.66 0.918022
Target:  5'- gCCGCGCuG-GACgggACCGg-GCGCUCuGACg -3'
miRNA:   3'- -GGCGCG-CaCUG---UGGUagCGCGAG-CUG- -5'
16192 3' -57.5 NC_004065.1 + 229008 0.66 0.918022
Target:  5'- gCGCGCGgaGCGagAUCGCGCacUCGGCc -3'
miRNA:   3'- gGCGCGCacUGUggUAGCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 91187 0.66 0.918022
Target:  5'- gCCGCG-GaaGCGCCGUCGgCGUgcgCGGCa -3'
miRNA:   3'- -GGCGCgCacUGUGGUAGC-GCGa--GCUG- -5'
16192 3' -57.5 NC_004065.1 + 162777 0.66 0.922826
Target:  5'- gCCGCGauaacgcgugcccCGUGAUACCcgCggGCGuCUCGAUc -3'
miRNA:   3'- -GGCGC-------------GCACUGUGGuaG--CGC-GAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 33474 0.66 0.923349
Target:  5'- uUCGCGgcCGUgGGCGCCuaCGCGC-CGGCa -3'
miRNA:   3'- -GGCGC--GCA-CUGUGGuaGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 80277 0.66 0.923349
Target:  5'- aCGCGCGagcuGCGCgA-CGCGCUgGACc -3'
miRNA:   3'- gGCGCGCac--UGUGgUaGCGCGAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 99157 0.66 0.923349
Target:  5'- gCCgGCGCccgaGGCuggucuCCAguUCGCGCUCGAUg -3'
miRNA:   3'- -GG-CGCGca--CUGu-----GGU--AGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 32525 0.66 0.923349
Target:  5'- aCgGCGCccauccugaUGACGgccCCGUCGCGC-CGGCg -3'
miRNA:   3'- -GgCGCGc--------ACUGU---GGUAGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 69408 0.66 0.923349
Target:  5'- gCUGC-CGacggGGCGCCAggugCGCGC-CGACc -3'
miRNA:   3'- -GGCGcGCa---CUGUGGUa---GCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 91455 0.66 0.925419
Target:  5'- cCCGgaGCGgacGGCACCGUCGCcgucaguccgccgccGCUCGuGCc -3'
miRNA:   3'- -GGCg-CGCa--CUGUGGUAGCG---------------CGAGC-UG- -5'
16192 3' -57.5 NC_004065.1 + 4190 0.66 0.928458
Target:  5'- -aGCGUGUGuccaugUACCGUCaugugGCGCUCGGu -3'
miRNA:   3'- ggCGCGCACu-----GUGGUAG-----CGCGAGCUg -5'
16192 3' -57.5 NC_004065.1 + 109542 0.66 0.928458
Target:  5'- cCCGgGCacGACACCGUCGUcagCGACc -3'
miRNA:   3'- -GGCgCGcaCUGUGGUAGCGcgaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.