Results 1 - 20 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16192 | 3' | -57.5 | NC_004065.1 | + | 129682 | 0.66 | 0.942488 |
Target: 5'- uCCGCGCuauACGCCAggGCGUcuUCGAUu -3' miRNA: 3'- -GGCGCGcacUGUGGUagCGCG--AGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 179575 | 0.66 | 0.942488 |
Target: 5'- gCUGgGCGcugaaggGGCGCCA-CGCGUgugCGACc -3' miRNA: 3'- -GGCgCGCa------CUGUGGUaGCGCGa--GCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 88439 | 0.66 | 0.942488 |
Target: 5'- gCCGuCGCGUugGugGCgGUCGC-CUCGcGCa -3' miRNA: 3'- -GGC-GCGCA--CugUGgUAGCGcGAGC-UG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 192312 | 0.66 | 0.942488 |
Target: 5'- aCGCGCGUGuccggGCACgA-CGCGUcgaUCGAg -3' miRNA: 3'- gGCGCGCAC-----UGUGgUaGCGCG---AGCUg -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 153951 | 0.66 | 0.942488 |
Target: 5'- aCCGCGgagccugcgacuUGUcuGCGCCGUCGCGgUCGuCg -3' miRNA: 3'- -GGCGC------------GCAc-UGUGGUAGCGCgAGCuG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 186961 | 0.66 | 0.942488 |
Target: 5'- aCGUGCGgu---CUGUCGCGC-CGACg -3' miRNA: 3'- gGCGCGCacuguGGUAGCGCGaGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 33924 | 0.66 | 0.942488 |
Target: 5'- gCCGUugGCGUGGCgaGCCG-CGCGUUCu-- -3' miRNA: 3'- -GGCG--CGCACUG--UGGUaGCGCGAGcug -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 90468 | 0.66 | 0.942488 |
Target: 5'- uCUGCGCGcauucucgGAUACuCGcUCGCGuCUUGGCg -3' miRNA: 3'- -GGCGCGCa-------CUGUG-GU-AGCGC-GAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 67564 | 0.66 | 0.942051 |
Target: 5'- gCCGCGCGaGGCcuucGCCGaaGCGCaggggccUCGGCu -3' miRNA: 3'- -GGCGCGCaCUG----UGGUagCGCG-------AGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 48608 | 0.66 | 0.941172 |
Target: 5'- gCUG-GCGaUGACACCGUCgacgagaaguauggGCGCgaccagCGACg -3' miRNA: 3'- -GGCgCGC-ACUGUGGUAG--------------CGCGa-----GCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 194769 | 0.66 | 0.938027 |
Target: 5'- cUCGCGcCGUcccGAgACCggGUCGCGCagGGCg -3' miRNA: 3'- -GGCGC-GCA---CUgUGG--UAGCGCGagCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 33366 | 0.66 | 0.938027 |
Target: 5'- -gGCGUGagaGACGCCG-CGCGCUacUGGCc -3' miRNA: 3'- ggCGCGCa--CUGUGGUaGCGCGA--GCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 27196 | 0.66 | 0.938027 |
Target: 5'- cCCGCgaGCGUcauGGCgGCgGUCGUGgUCGGCa -3' miRNA: 3'- -GGCG--CGCA---CUG-UGgUAGCGCgAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 60713 | 0.66 | 0.938027 |
Target: 5'- gCGCGCGgGACuuaCAaCGCGCU-GGCg -3' miRNA: 3'- gGCGCGCaCUGug-GUaGCGCGAgCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 75871 | 0.66 | 0.935247 |
Target: 5'- uCCGCGCGUaGAU---GUCGCGCaggagggccugguacUCGGCc -3' miRNA: 3'- -GGCGCGCA-CUGuggUAGCGCG---------------AGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 65095 | 0.66 | 0.933351 |
Target: 5'- aCGCGUucaacgacuucuGUGugACCAUCGCGgaCa-- -3' miRNA: 3'- gGCGCG------------CACugUGGUAGCGCgaGcug -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 118500 | 0.66 | 0.933351 |
Target: 5'- gCUGCG-GUGGgGCCuGUCGCucggGUUCGGCa -3' miRNA: 3'- -GGCGCgCACUgUGG-UAGCG----CGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 32743 | 0.66 | 0.933351 |
Target: 5'- gUCGCGCGaGAagcCGCCcaUGCGCUCGuaGCg -3' miRNA: 3'- -GGCGCGCaCU---GUGGuaGCGCGAGC--UG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 100708 | 0.66 | 0.933351 |
Target: 5'- gUCGCG-GUGGaagaguagccCACCAUCGUG-UCGGCu -3' miRNA: 3'- -GGCGCgCACU----------GUGGUAGCGCgAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 105287 | 0.66 | 0.933351 |
Target: 5'- gCCGUGC-UGAacaACCA-CGCGUgCGGCg -3' miRNA: 3'- -GGCGCGcACUg--UGGUaGCGCGaGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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