miRNA display CGI


Results 21 - 40 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16192 3' -57.5 NC_004065.1 + 65095 0.66 0.933351
Target:  5'- aCGCGUucaacgacuucuGUGugACCAUCGCGgaCa-- -3'
miRNA:   3'- gGCGCG------------CACugUGGUAGCGCgaGcug -5'
16192 3' -57.5 NC_004065.1 + 32743 0.66 0.933351
Target:  5'- gUCGCGCGaGAagcCGCCcaUGCGCUCGuaGCg -3'
miRNA:   3'- -GGCGCGCaCU---GUGGuaGCGCGAGC--UG- -5'
16192 3' -57.5 NC_004065.1 + 157309 0.66 0.932872
Target:  5'- gUCGCGCGaacGCACCAccUUGacgaaguccggguCGCUCGGCa -3'
miRNA:   3'- -GGCGCGCac-UGUGGU--AGC-------------GCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 108010 0.66 0.931906
Target:  5'- gCCGCGUGaGACACCGucugguuagaggauUCGUcguGC-CGGCa -3'
miRNA:   3'- -GGCGCGCaCUGUGGU--------------AGCG---CGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 174607 0.66 0.931906
Target:  5'- cCCGCGCcccgGACAgcCCAUCaGgccggucuucugucCGCUCGGCa -3'
miRNA:   3'- -GGCGCGca--CUGU--GGUAG-C--------------GCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 205254 0.66 0.928459
Target:  5'- -gGCGCGaGAUACC--CGCGC-CGGCc -3'
miRNA:   3'- ggCGCGCaCUGUGGuaGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 103849 0.66 0.928459
Target:  5'- aCGC-CGUGACgGCgAUCGCGCaccacgCGAUc -3'
miRNA:   3'- gGCGcGCACUG-UGgUAGCGCGa-----GCUG- -5'
16192 3' -57.5 NC_004065.1 + 129711 0.66 0.928459
Target:  5'- aCGCgGUGUGGCugCGcgaagacaUCGCGgCUCGuGCg -3'
miRNA:   3'- gGCG-CGCACUGugGU--------AGCGC-GAGC-UG- -5'
16192 3' -57.5 NC_004065.1 + 4190 0.66 0.928458
Target:  5'- -aGCGUGUGuccaugUACCGUCaugugGCGCUCGGu -3'
miRNA:   3'- ggCGCGCACu-----GUGGUAG-----CGCGAGCUg -5'
16192 3' -57.5 NC_004065.1 + 109542 0.66 0.928458
Target:  5'- cCCGgGCacGACACCGUCGUcagCGACc -3'
miRNA:   3'- -GGCgCGcaCUGUGGUAGCGcgaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 91455 0.66 0.925419
Target:  5'- cCCGgaGCGgacGGCACCGUCGCcgucaguccgccgccGCUCGuGCc -3'
miRNA:   3'- -GGCg-CGCa--CUGUGGUAGCG---------------CGAGC-UG- -5'
16192 3' -57.5 NC_004065.1 + 32525 0.66 0.923349
Target:  5'- aCgGCGCccauccugaUGACGgccCCGUCGCGC-CGGCg -3'
miRNA:   3'- -GgCGCGc--------ACUGU---GGUAGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 99157 0.66 0.923349
Target:  5'- gCCgGCGCccgaGGCuggucuCCAguUCGCGCUCGAUg -3'
miRNA:   3'- -GG-CGCGca--CUGu-----GGU--AGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 33474 0.66 0.923349
Target:  5'- uUCGCGgcCGUgGGCGCCuaCGCGC-CGGCa -3'
miRNA:   3'- -GGCGC--GCA-CUGUGGuaGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 69408 0.66 0.923349
Target:  5'- gCUGC-CGacggGGCGCCAggugCGCGC-CGACc -3'
miRNA:   3'- -GGCGcGCa---CUGUGGUa---GCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 80277 0.66 0.923349
Target:  5'- aCGCGCGagcuGCGCgA-CGCGCUgGACc -3'
miRNA:   3'- gGCGCGCac--UGUGgUaGCGCGAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 162777 0.66 0.922826
Target:  5'- gCCGCGauaacgcgugcccCGUGAUACCcgCggGCGuCUCGAUc -3'
miRNA:   3'- -GGCGC-------------GCACUGUGGuaG--CGC-GAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 34508 0.66 0.918022
Target:  5'- gCCGCGCuG-GACgggACCGg-GCGCUCuGACg -3'
miRNA:   3'- -GGCGCG-CaCUG---UGGUagCGCGAG-CUG- -5'
16192 3' -57.5 NC_004065.1 + 229008 0.66 0.918022
Target:  5'- gCGCGCGgaGCGagAUCGCGCacUCGGCc -3'
miRNA:   3'- gGCGCGCacUGUggUAGCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 91187 0.66 0.918022
Target:  5'- gCCGCG-GaaGCGCCGUCGgCGUgcgCGGCa -3'
miRNA:   3'- -GGCGCgCacUGUGGUAGC-GCGa--GCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.