miRNA display CGI


Results 81 - 100 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16192 3' -57.5 NC_004065.1 + 88474 0.68 0.874787
Target:  5'- uUGCGCGcGACGCCGaagagCGCGUccUCGGa -3'
miRNA:   3'- gGCGCGCaCUGUGGUa----GCGCG--AGCUg -5'
16192 3' -57.5 NC_004065.1 + 153655 0.68 0.874787
Target:  5'- uCCGCG-GcGGCGCCggCGCGauggagaUCGACa -3'
miRNA:   3'- -GGCGCgCaCUGUGGuaGCGCg------AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 745 0.68 0.874787
Target:  5'- aCGCgaccaGCGUGcCGCgucgcggguUCGCGCUCGACc -3'
miRNA:   3'- gGCG-----CGCACuGUGgu-------AGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 170304 0.68 0.874097
Target:  5'- uCCGCGaCG-GuCGCCGUgCGCcgcggccGCUCGGCg -3'
miRNA:   3'- -GGCGC-GCaCuGUGGUA-GCG-------CGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 197072 0.68 0.867794
Target:  5'- gCCGCGaCGUcGACGCCcgcaucCGCGCgggagcCGACc -3'
miRNA:   3'- -GGCGC-GCA-CUGUGGua----GCGCGa-----GCUG- -5'
16192 3' -57.5 NC_004065.1 + 200529 0.68 0.867794
Target:  5'- gCCGCGCacagGGCGuCCAUgGCGagggCGACg -3'
miRNA:   3'- -GGCGCGca--CUGU-GGUAgCGCga--GCUG- -5'
16192 3' -57.5 NC_004065.1 + 70718 0.68 0.867794
Target:  5'- cCUGCGCacggacacggugGUGACGCugaacggcauCAUC-CGCUCGGCg -3'
miRNA:   3'- -GGCGCG------------CACUGUG----------GUAGcGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 151085 0.68 0.867084
Target:  5'- cCUGCGCGggccuggUGGCGCC--CGaGCUCGGCg -3'
miRNA:   3'- -GGCGCGC-------ACUGUGGuaGCgCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 170865 0.68 0.867084
Target:  5'- gCCGCGCGcccgaucgGACucucgccgucgucGCC-UCGCGCUCG-Cu -3'
miRNA:   3'- -GGCGCGCa-------CUG-------------UGGuAGCGCGAGCuG- -5'
16192 3' -57.5 NC_004065.1 + 80116 0.68 0.863505
Target:  5'- gCCGCGCGccccucauccaaccGGCACCcUCGgGUUCGGg -3'
miRNA:   3'- -GGCGCGCa-------------CUGUGGuAGCgCGAGCUg -5'
16192 3' -57.5 NC_004065.1 + 149421 0.68 0.860608
Target:  5'- aCCGC-CGUGaggaacgggaGCAgCA-CGCGCUCGAUc -3'
miRNA:   3'- -GGCGcGCAC----------UGUgGUaGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 66650 0.68 0.853236
Target:  5'- uCgGCGCGgugGGCGCCcggcgaGUGUUCGACc -3'
miRNA:   3'- -GgCGCGCa--CUGUGGuag---CGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 105543 0.68 0.848724
Target:  5'- uCCGCGCGgcccugGAC-CCGgcgcagcggcacggCGCGCcgUCGGCg -3'
miRNA:   3'- -GGCGCGCa-----CUGuGGUa-------------GCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 43105 0.68 0.845681
Target:  5'- uCCGCGacccGGCGCCGaucCGCGCUCG-Cg -3'
miRNA:   3'- -GGCGCgca-CUGUGGUa--GCGCGAGCuG- -5'
16192 3' -57.5 NC_004065.1 + 87635 0.68 0.845681
Target:  5'- cCCGCGCGa-GCGCgAacugCGCGCcuUCGACa -3'
miRNA:   3'- -GGCGCGCacUGUGgUa---GCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 35922 0.69 0.837951
Target:  5'- cCCGCG-GUcugcGACGCCucccuGUCGUGCUcCGACc -3'
miRNA:   3'- -GGCGCgCA----CUGUGG-----UAGCGCGA-GCUG- -5'
16192 3' -57.5 NC_004065.1 + 163432 0.69 0.83795
Target:  5'- gCCGCG-GUGGcCGCCGcCGUGCagUCGGCc -3'
miRNA:   3'- -GGCGCgCACU-GUGGUaGCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 92082 0.69 0.83795
Target:  5'- gCCGCGCGUuGCGCCAgcaGCuccgaGCcCGGCg -3'
miRNA:   3'- -GGCGCGCAcUGUGGUag-CG-----CGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 157109 0.69 0.835598
Target:  5'- gCCGCcgggggcgccuucaGCGggGGCAUCAUCGCGUUCa-- -3'
miRNA:   3'- -GGCG--------------CGCa-CUGUGGUAGCGCGAGcug -5'
16192 3' -57.5 NC_004065.1 + 161098 0.69 0.83005
Target:  5'- uCCGCGCGcaacuucuUGAUcUC--CGCGCUCGGCg -3'
miRNA:   3'- -GGCGCGC--------ACUGuGGuaGCGCGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.