miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16192 3' -57.5 NC_004065.1 + 596 0.69 0.805396
Target:  5'- cCCGUG-GUGGCagACCAguuaCGCGCUCaGGCu -3'
miRNA:   3'- -GGCGCgCACUG--UGGUa---GCGCGAG-CUG- -5'
16192 3' -57.5 NC_004065.1 + 661 0.66 0.933351
Target:  5'- gCCGCGCGUagcgaGCACCcgcUCGCuGgUCGAg -3'
miRNA:   3'- -GGCGCGCAc----UGUGGu--AGCG-CgAGCUg -5'
16192 3' -57.5 NC_004065.1 + 745 0.68 0.874787
Target:  5'- aCGCgaccaGCGUGcCGCgucgcggguUCGCGCUCGACc -3'
miRNA:   3'- gGCG-----CGCACuGUGgu-------AGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 1160 0.67 0.912479
Target:  5'- gCCGCG-GUGGuCcCCAUUGUGUcgUCGGCg -3'
miRNA:   3'- -GGCGCgCACU-GuGGUAGCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 4190 0.66 0.928458
Target:  5'- -aGCGUGUGuccaugUACCGUCaugugGCGCUCGGu -3'
miRNA:   3'- ggCGCGCACu-----GUGGUAG-----CGCGAGCUg -5'
16192 3' -57.5 NC_004065.1 + 12623 0.67 0.888178
Target:  5'- -aGCGCGUcGAgA-CGUCGCGgUUCGACa -3'
miRNA:   3'- ggCGCGCA-CUgUgGUAGCGC-GAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 17787 0.73 0.628127
Target:  5'- -aGCGgGUG--GCCGUCGCGUUUGGCg -3'
miRNA:   3'- ggCGCgCACugUGGUAGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 20005 0.7 0.788236
Target:  5'- gCCGCGUGUgGugAUguUCGUGCgacCGGCa -3'
miRNA:   3'- -GGCGCGCA-CugUGguAGCGCGa--GCUG- -5'
16192 3' -57.5 NC_004065.1 + 22088 0.67 0.912479
Target:  5'- cCCGCGCGcuccGAagAUCAUaUGCGCgUCGACg -3'
miRNA:   3'- -GGCGCGCa---CUg-UGGUA-GCGCG-AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 22502 0.68 0.874787
Target:  5'- gCGCGCGgcgagGAggaccgacgacCGCUAUCGCGCcgCGAg -3'
miRNA:   3'- gGCGCGCa----CU-----------GUGGUAGCGCGa-GCUg -5'
16192 3' -57.5 NC_004065.1 + 22665 0.67 0.900751
Target:  5'- aCCGgaugcCGCGUGACACCcgCucCGCUUaGACu -3'
miRNA:   3'- -GGC-----GCGCACUGUGGuaGc-GCGAG-CUG- -5'
16192 3' -57.5 NC_004065.1 + 26732 0.67 0.900751
Target:  5'- uUCGCGCGacgauucgcGACACguCGUCGUGgaCGACg -3'
miRNA:   3'- -GGCGCGCa--------CUGUG--GUAGCGCgaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 27196 0.66 0.938027
Target:  5'- cCCGCgaGCGUcauGGCgGCgGUCGUGgUCGGCa -3'
miRNA:   3'- -GGCG--CGCA---CUG-UGgUAGCGCgAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 28012 0.73 0.612536
Target:  5'- -aGCGCcgaggagGACGCCAUCGCGUuggcggccaacgaccUCGACg -3'
miRNA:   3'- ggCGCGca-----CUGUGGUAGCGCG---------------AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 29228 0.74 0.569911
Target:  5'- cCCGCGCcgaGACGCCGUCGCccgccaccgccGCgCGACg -3'
miRNA:   3'- -GGCGCGca-CUGUGGUAGCG-----------CGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 29916 0.67 0.894568
Target:  5'- cCCGCGCGaagu-CC-UCGgGCUCGAUa -3'
miRNA:   3'- -GGCGCGCacuguGGuAGCgCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 32525 0.66 0.923349
Target:  5'- aCgGCGCccauccugaUGACGgccCCGUCGCGC-CGGCg -3'
miRNA:   3'- -GgCGCGc--------ACUGU---GGUAGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 32743 0.66 0.933351
Target:  5'- gUCGCGCGaGAagcCGCCcaUGCGCUCGuaGCg -3'
miRNA:   3'- -GGCGCGCaCU---GUGGuaGCGCGAGC--UG- -5'
16192 3' -57.5 NC_004065.1 + 32947 0.67 0.906721
Target:  5'- cCCGCGCG-GAUGCgggCGUCGaCGUcgCGGCg -3'
miRNA:   3'- -GGCGCGCaCUGUG---GUAGC-GCGa-GCUG- -5'
16192 3' -57.5 NC_004065.1 + 33366 0.66 0.938027
Target:  5'- -gGCGUGagaGACGCCG-CGCGCUacUGGCc -3'
miRNA:   3'- ggCGCGCa--CUGUGGUaGCGCGA--GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.