miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16192 3' -57.5 NC_004065.1 + 70718 0.68 0.867794
Target:  5'- cCUGCGCacggacacggugGUGACGCugaacggcauCAUC-CGCUCGGCg -3'
miRNA:   3'- -GGCGCG------------CACUGUG----------GUAGcGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 71488 0.7 0.788236
Target:  5'- gCGUGCGagagauGCGCCgGUCGCGCUCG-Ca -3'
miRNA:   3'- gGCGCGCac----UGUGG-UAGCGCGAGCuG- -5'
16192 3' -57.5 NC_004065.1 + 74717 0.71 0.713224
Target:  5'- -aGCGCG-GGCGCCugcgacaguaGCGUUCGACg -3'
miRNA:   3'- ggCGCGCaCUGUGGuag-------CGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 75871 0.66 0.935247
Target:  5'- uCCGCGCGUaGAU---GUCGCGCaggagggccugguacUCGGCc -3'
miRNA:   3'- -GGCGCGCA-CUGuggUAGCGCG---------------AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 79628 0.69 0.813767
Target:  5'- gCGCGCG-GACGCUGcgggCGUGCgugUCGGCg -3'
miRNA:   3'- gGCGCGCaCUGUGGUa---GCGCG---AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 80116 0.68 0.863505
Target:  5'- gCCGCGCGccccucauccaaccGGCACCcUCGgGUUCGGg -3'
miRNA:   3'- -GGCGCGCa-------------CUGUGGuAGCgCGAGCUg -5'
16192 3' -57.5 NC_004065.1 + 80277 0.66 0.923349
Target:  5'- aCGCGCGagcuGCGCgA-CGCGCUgGACc -3'
miRNA:   3'- gGCGCGCac--UGUGgUaGCGCGAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 82583 0.7 0.770566
Target:  5'- cCCGCagaacucguugGCGUccauGACGCCGUCGUGCUgcugGACg -3'
miRNA:   3'- -GGCG-----------CGCA----CUGUGGUAGCGCGAg---CUG- -5'
16192 3' -57.5 NC_004065.1 + 85542 0.67 0.906722
Target:  5'- uUCGUGaagacGGCGCaCGUCGUGUUCGGCg -3'
miRNA:   3'- -GGCGCgca--CUGUG-GUAGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 87635 0.68 0.845681
Target:  5'- cCCGCGCGa-GCGCgAacugCGCGCcuUCGACa -3'
miRNA:   3'- -GGCGCGCacUGUGgUa---GCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 87696 0.71 0.72457
Target:  5'- gCCGCcgGCGUucGAgACC-UCGCGgUCGACg -3'
miRNA:   3'- -GGCG--CGCA--CUgUGGuAGCGCgAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 88439 0.66 0.942488
Target:  5'- gCCGuCGCGUugGugGCgGUCGC-CUCGcGCa -3'
miRNA:   3'- -GGC-GCGCA--CugUGgUAGCGcGAGC-UG- -5'
16192 3' -57.5 NC_004065.1 + 88474 0.68 0.874787
Target:  5'- uUGCGCGcGACGCCGaagagCGCGUccUCGGa -3'
miRNA:   3'- gGCGCGCaCUGUGGUa----GCGCG--AGCUg -5'
16192 3' -57.5 NC_004065.1 + 88965 0.7 0.752448
Target:  5'- cUCGCGCGUGAUggugGCCAccuggggCGC-CUUGACg -3'
miRNA:   3'- -GGCGCGCACUG----UGGUa------GCGcGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 90468 0.66 0.942488
Target:  5'- uCUGCGCGcauucucgGAUACuCGcUCGCGuCUUGGCg -3'
miRNA:   3'- -GGCGCGCa-------CUGUG-GU-AGCGC-GAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 91187 0.66 0.918022
Target:  5'- gCCGCG-GaaGCGCCGUCGgCGUgcgCGGCa -3'
miRNA:   3'- -GGCGCgCacUGUGGUAGC-GCGa--GCUG- -5'
16192 3' -57.5 NC_004065.1 + 91250 0.67 0.912479
Target:  5'- -aGCGgGaccuUGACGCCAUCgaccGCGC-CGACc -3'
miRNA:   3'- ggCGCgC----ACUGUGGUAG----CGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 91455 0.66 0.925419
Target:  5'- cCCGgaGCGgacGGCACCGUCGCcgucaguccgccgccGCUCGuGCc -3'
miRNA:   3'- -GGCg-CGCa--CUGUGGUAGCG---------------CGAGC-UG- -5'
16192 3' -57.5 NC_004065.1 + 91619 0.67 0.906721
Target:  5'- aCCGCGCc--GCAgaaGUCGCGgUCGACg -3'
miRNA:   3'- -GGCGCGcacUGUgg-UAGCGCgAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 91910 0.72 0.676767
Target:  5'- aCCGaCGCGau-CGCCGUCGCGgUcCGACg -3'
miRNA:   3'- -GGC-GCGCacuGUGGUAGCGCgA-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.