miRNA display CGI


Results 61 - 80 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16192 3' -57.5 NC_004065.1 + 92049 0.68 0.874787
Target:  5'- gCGCGCucgaGGCAUCucacgCGCGCUCGGa -3'
miRNA:   3'- gGCGCGca--CUGUGGua---GCGCGAGCUg -5'
16192 3' -57.5 NC_004065.1 + 92082 0.69 0.83795
Target:  5'- gCCGCGCGUuGCGCCAgcaGCuccgaGCcCGGCg -3'
miRNA:   3'- -GGCGCGCAcUGUGGUag-CG-----CGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 94419 0.67 0.892673
Target:  5'- aCC-CGCGUGACgGCCGUCucccagcggcgcguGUGUUCGAa -3'
miRNA:   3'- -GGcGCGCACUG-UGGUAG--------------CGCGAGCUg -5'
16192 3' -57.5 NC_004065.1 + 96153 0.69 0.821987
Target:  5'- uCCGCcCGgcGCGCCGUCuuGCGaCUCGACg -3'
miRNA:   3'- -GGCGcGCacUGUGGUAG--CGC-GAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 96969 0.71 0.733945
Target:  5'- gCCGCGCcUGcuGCGCCggccguccGUCGCGCUgcugCGACg -3'
miRNA:   3'- -GGCGCGcAC--UGUGG--------UAGCGCGA----GCUG- -5'
16192 3' -57.5 NC_004065.1 + 97931 0.67 0.906722
Target:  5'- gCCGCGCGUccGGCACCggCGUgGCagCGGu -3'
miRNA:   3'- -GGCGCGCA--CUGUGGuaGCG-CGa-GCUg -5'
16192 3' -57.5 NC_004065.1 + 99157 0.66 0.923349
Target:  5'- gCCgGCGCccgaGGCuggucuCCAguUCGCGCUCGAUg -3'
miRNA:   3'- -GG-CGCGca--CUGu-----GGU--AGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 100708 0.66 0.933351
Target:  5'- gUCGCG-GUGGaagaguagccCACCAUCGUG-UCGGCu -3'
miRNA:   3'- -GGCGCgCACU----------GUGGUAGCGCgAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 101435 0.7 0.761559
Target:  5'- -gGCGCGUGcggauGCGCCuUCGCcGC-CGACg -3'
miRNA:   3'- ggCGCGCAC-----UGUGGuAGCG-CGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 101575 0.71 0.696042
Target:  5'- aUCGCGCccgcgGACGCCuccgcCGCGCUCaGACu -3'
miRNA:   3'- -GGCGCGca---CUGUGGua---GCGCGAG-CUG- -5'
16192 3' -57.5 NC_004065.1 + 103455 0.67 0.888178
Target:  5'- cCUGCGCGUGcugcuGCGCCA-CGCGCcccCGuGCu -3'
miRNA:   3'- -GGCGCGCAC-----UGUGGUaGCGCGa--GC-UG- -5'
16192 3' -57.5 NC_004065.1 + 103540 0.71 0.696042
Target:  5'- aCGCGgGUGcagcGCGCCAacaUCGCGCagGGCu -3'
miRNA:   3'- gGCGCgCAC----UGUGGU---AGCGCGagCUG- -5'
16192 3' -57.5 NC_004065.1 + 103753 0.67 0.888178
Target:  5'- uUCGCGCGgcggGGCcuccggACCGUCGCGCa---- -3'
miRNA:   3'- -GGCGCGCa---CUG------UGGUAGCGCGagcug -5'
16192 3' -57.5 NC_004065.1 + 103849 0.66 0.928459
Target:  5'- aCGC-CGUGACgGCgAUCGCGCaccacgCGAUc -3'
miRNA:   3'- gGCGcGCACUG-UGgUAGCGCGa-----GCUG- -5'
16192 3' -57.5 NC_004065.1 + 105287 0.66 0.933351
Target:  5'- gCCGUGC-UGAacaACCA-CGCGUgCGGCg -3'
miRNA:   3'- -GGCGCGcACUg--UGGUaGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 105543 0.68 0.848724
Target:  5'- uCCGCGCGgcccugGAC-CCGgcgcagcggcacggCGCGCcgUCGGCg -3'
miRNA:   3'- -GGCGCGCa-----CUGuGGUa-------------GCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 106271 0.72 0.657359
Target:  5'- gCGCGCGgcGCACCGagGUGCUgGACu -3'
miRNA:   3'- gGCGCGCacUGUGGUagCGCGAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 106437 0.75 0.513105
Target:  5'- cCCGCGCG-GGCGCuCGUCGUcgauGCUgGGCg -3'
miRNA:   3'- -GGCGCGCaCUGUG-GUAGCG----CGAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 108010 0.66 0.931906
Target:  5'- gCCGCGUGaGACACCGucugguuagaggauUCGUcguGC-CGGCa -3'
miRNA:   3'- -GGCGCGCaCUGUGGU--------------AGCG---CGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 109405 0.67 0.903165
Target:  5'- gCCGCgGCG-GACGCCAcgagcuacucgauccUCGUGCaccCGGCc -3'
miRNA:   3'- -GGCG-CGCaCUGUGGU---------------AGCGCGa--GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.