miRNA display CGI


Results 81 - 100 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16192 3' -57.5 NC_004065.1 + 109542 0.66 0.928458
Target:  5'- cCCGgGCacGACACCGUCGUcagCGACc -3'
miRNA:   3'- -GGCgCGcaCUGUGGUAGCGcgaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 109919 0.67 0.912479
Target:  5'- uCCGcCGCG-GcCGCCGUCGCGUccCGGg -3'
miRNA:   3'- -GGC-GCGCaCuGUGGUAGCGCGa-GCUg -5'
16192 3' -57.5 NC_004065.1 + 110697 0.68 0.874787
Target:  5'- gUGUGaCGUGAgcCGCCGcCGCGaCUCGGCc -3'
miRNA:   3'- gGCGC-GCACU--GUGGUaGCGC-GAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 111913 0.71 0.696042
Target:  5'- uCCGCGCGgcgacgagaGACGCCAugggcgccgccgUCGCGgUgGACg -3'
miRNA:   3'- -GGCGCGCa--------CUGUGGU------------AGCGCgAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 113924 0.67 0.912479
Target:  5'- aUCGCGCGUGuCGacgaCGcgGCGCUCGGg -3'
miRNA:   3'- -GGCGCGCACuGUg---GUagCGCGAGCUg -5'
16192 3' -57.5 NC_004065.1 + 114460 0.67 0.900751
Target:  5'- aCCGC-CGUcuCACCAUCGCgGCggUGGCg -3'
miRNA:   3'- -GGCGcGCAcuGUGGUAGCG-CGa-GCUG- -5'
16192 3' -57.5 NC_004065.1 + 114972 0.69 0.821987
Target:  5'- cUCGCGC---GCGCCGUUGCcCUCGGCc -3'
miRNA:   3'- -GGCGCGcacUGUGGUAGCGcGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 118500 0.66 0.933351
Target:  5'- gCUGCG-GUGGgGCCuGUCGCucggGUUCGGCa -3'
miRNA:   3'- -GGCGCgCACUgUGG-UAGCG----CGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 124240 0.74 0.569911
Target:  5'- aUCGCgGCGUaACAgCAUCGCGCUCcGCa -3'
miRNA:   3'- -GGCG-CGCAcUGUgGUAGCGCGAGcUG- -5'
16192 3' -57.5 NC_004065.1 + 125647 0.7 0.761559
Target:  5'- gCCGcCGCGUGGCguguGCCAU-GUGCUCccuGACg -3'
miRNA:   3'- -GGC-GCGCACUG----UGGUAgCGCGAG---CUG- -5'
16192 3' -57.5 NC_004065.1 + 126569 0.67 0.912479
Target:  5'- -gGCGCGUGGCGCagcagcaCGCGCagGAa -3'
miRNA:   3'- ggCGCGCACUGUGgua----GCGCGagCUg -5'
16192 3' -57.5 NC_004065.1 + 129682 0.66 0.942488
Target:  5'- uCCGCGCuauACGCCAggGCGUcuUCGAUu -3'
miRNA:   3'- -GGCGCGcacUGUGGUagCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 129711 0.66 0.928459
Target:  5'- aCGCgGUGUGGCugCGcgaagacaUCGCGgCUCGuGCg -3'
miRNA:   3'- gGCG-CGCACUGugGU--------AGCGC-GAGC-UG- -5'
16192 3' -57.5 NC_004065.1 + 137482 0.67 0.900751
Target:  5'- gCGCGCGUGcgcGCGCCcgcccgcccGUaCGCGCgcgCGAg -3'
miRNA:   3'- gGCGCGCAC---UGUGG---------UA-GCGCGa--GCUg -5'
16192 3' -57.5 NC_004065.1 + 142406 0.68 0.881583
Target:  5'- cUCGCGCG-GGCcaucuuucgccuGCCggCGCGC-CGGCu -3'
miRNA:   3'- -GGCGCGCaCUG------------UGGuaGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 142510 0.7 0.779461
Target:  5'- gCUGCGCGUcGACACCGUgucagcgaCGCGgUuucaCGACg -3'
miRNA:   3'- -GGCGCGCA-CUGUGGUA--------GCGCgA----GCUG- -5'
16192 3' -57.5 NC_004065.1 + 143468 0.68 0.881583
Target:  5'- uCUGCGUcgucGUGACGCCcgUGCGuCUgGAUc -3'
miRNA:   3'- -GGCGCG----CACUGUGGuaGCGC-GAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 149421 0.68 0.860608
Target:  5'- aCCGC-CGUGaggaacgggaGCAgCA-CGCGCUCGAUc -3'
miRNA:   3'- -GGCGcGCAC----------UGUgGUaGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 151085 0.68 0.867084
Target:  5'- cCUGCGCGggccuggUGGCGCC--CGaGCUCGGCg -3'
miRNA:   3'- -GGCGCGC-------ACUGUGGuaGCgCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 151409 0.73 0.605723
Target:  5'- aCCGCguucaccucaggcgGCGcGACGaCGUCGCGUUCGACg -3'
miRNA:   3'- -GGCG--------------CGCaCUGUgGUAGCGCGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.