miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16192 3' -57.5 NC_004065.1 + 186961 0.66 0.942488
Target:  5'- aCGUGCGgu---CUGUCGCGC-CGACg -3'
miRNA:   3'- gGCGCGCacuguGGUAGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 183825 0.7 0.787364
Target:  5'- uCCGCGCGguguuUGucguucggcccccACGCCGUCGCGUguUUGGCc -3'
miRNA:   3'- -GGCGCGC-----AC-------------UGUGGUAGCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 183295 0.73 0.58922
Target:  5'- -aGCGCGUG-CGCC-UCGUGCgCGACc -3'
miRNA:   3'- ggCGCGCACuGUGGuAGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 179575 0.66 0.942488
Target:  5'- gCUGgGCGcugaaggGGCGCCA-CGCGUgugCGACc -3'
miRNA:   3'- -GGCgCGCa------CUGUGGUaGCGCGa--GCUG- -5'
16192 3' -57.5 NC_004065.1 + 176768 0.67 0.894569
Target:  5'- aCGUGaauuCGUucGACACgAUCGCGC-CGGCg -3'
miRNA:   3'- gGCGC----GCA--CUGUGgUAGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 174607 0.66 0.931906
Target:  5'- cCCGCGCcccgGACAgcCCAUCaGgccggucuucugucCGCUCGGCa -3'
miRNA:   3'- -GGCGCGca--CUGU--GGUAG-C--------------GCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 170865 0.68 0.867084
Target:  5'- gCCGCGCGcccgaucgGACucucgccgucgucGCC-UCGCGCUCG-Cu -3'
miRNA:   3'- -GGCGCGCa-------CUG-------------UGGuAGCGCGAGCuG- -5'
16192 3' -57.5 NC_004065.1 + 170451 0.67 0.910775
Target:  5'- gCCGC-CGgaGGCGCCuUCGCugccgccgcagaccGCUCGGCg -3'
miRNA:   3'- -GGCGcGCa-CUGUGGuAGCG--------------CGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 170304 0.68 0.874097
Target:  5'- uCCGCGaCG-GuCGCCGUgCGCcgcggccGCUCGGCg -3'
miRNA:   3'- -GGCGC-GCaCuGUGGUA-GCG-------CGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 170284 0.7 0.785616
Target:  5'- gCCaCGCGgucGGCACCAUCGcCGCcgggucgguaaacaUCGGCa -3'
miRNA:   3'- -GGcGCGCa--CUGUGGUAGC-GCG--------------AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 169680 0.68 0.881583
Target:  5'- aCCGUGC---GCACCAaCGCGUaCGGCg -3'
miRNA:   3'- -GGCGCGcacUGUGGUaGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 169567 0.67 0.894568
Target:  5'- uCUGCGCGcUGuugcCGCUGUCGCgGCUcCGGCc -3'
miRNA:   3'- -GGCGCGC-ACu---GUGGUAGCG-CGA-GCUG- -5'
16192 3' -57.5 NC_004065.1 + 168335 0.69 0.796884
Target:  5'- gCCGCGgaCGUGACGcgcugcggacCCcUCGCGCUCuACa -3'
miRNA:   3'- -GGCGC--GCACUGU----------GGuAGCGCGAGcUG- -5'
16192 3' -57.5 NC_004065.1 + 165476 0.72 0.667076
Target:  5'- aCCGCGUccagcuguGUGuCGCCGUCGCGC-CG-Ca -3'
miRNA:   3'- -GGCGCG--------CACuGUGGUAGCGCGaGCuG- -5'
16192 3' -57.5 NC_004065.1 + 163565 0.68 0.874787
Target:  5'- gCCGCGCGU-ACAgCuUCGUGaUCGACc -3'
miRNA:   3'- -GGCGCGCAcUGUgGuAGCGCgAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 163432 0.69 0.83795
Target:  5'- gCCGCG-GUGGcCGCCGcCGUGCagUCGGCc -3'
miRNA:   3'- -GGCGCgCACU-GUGGUaGCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 163016 0.7 0.779461
Target:  5'- cCCGCGCGgGGC-CCGUacacggGCGC-CGACu -3'
miRNA:   3'- -GGCGCGCaCUGuGGUAg-----CGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 162777 0.66 0.922826
Target:  5'- gCCGCGauaacgcgugcccCGUGAUACCcgCggGCGuCUCGAUc -3'
miRNA:   3'- -GGCGC-------------GCACUGUGGuaG--CGC-GAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 162264 0.73 0.608642
Target:  5'- cCCGCGCcguucGUcACGCCGUCGgacgcggcgcCGCUCGGCa -3'
miRNA:   3'- -GGCGCG-----CAcUGUGGUAGC----------GCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 161098 0.69 0.83005
Target:  5'- uCCGCGCGcaacuucuUGAUcUC--CGCGCUCGGCg -3'
miRNA:   3'- -GGCGCGC--------ACUGuGGuaGCGCGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.