Results 41 - 60 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16192 | 3' | -57.5 | NC_004065.1 | + | 160280 | 0.69 | 0.805396 |
Target: 5'- uCCgGCGCGUGcuuCGCCAggaUCGUuucGUUCGGCg -3' miRNA: 3'- -GG-CGCGCACu--GUGGU---AGCG---CGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 157557 | 0.77 | 0.391401 |
Target: 5'- gCCGCGCc-GACACCGUCuCGCUCGuCg -3' miRNA: 3'- -GGCGCGcaCUGUGGUAGcGCGAGCuG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 157309 | 0.66 | 0.932872 |
Target: 5'- gUCGCGCGaacGCACCAccUUGacgaaguccggguCGCUCGGCa -3' miRNA: 3'- -GGCGCGCac-UGUGGU--AGC-------------GCGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 157109 | 0.69 | 0.835598 |
Target: 5'- gCCGCcgggggcgccuucaGCGggGGCAUCAUCGCGUUCa-- -3' miRNA: 3'- -GGCG--------------CGCa-CUGUGGUAGCGCGAGcug -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 153951 | 0.66 | 0.942488 |
Target: 5'- aCCGCGgagccugcgacuUGUcuGCGCCGUCGCGgUCGuCg -3' miRNA: 3'- -GGCGC------------GCAc-UGUGGUAGCGCgAGCuG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 153655 | 0.68 | 0.874787 |
Target: 5'- uCCGCG-GcGGCGCCggCGCGauggagaUCGACa -3' miRNA: 3'- -GGCGCgCaCUGUGGuaGCGCg------AGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 152826 | 0.74 | 0.569911 |
Target: 5'- gCCGUGCGgGGCGCCGcCGCGCacuugUGGCa -3' miRNA: 3'- -GGCGCGCaCUGUGGUaGCGCGa----GCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 151803 | 0.78 | 0.330827 |
Target: 5'- gUGCGCGUacaGCCAgaaaUCGCGCUCGACg -3' miRNA: 3'- gGCGCGCAcugUGGU----AGCGCGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 151409 | 0.73 | 0.605723 |
Target: 5'- aCCGCguucaccucaggcgGCGcGACGaCGUCGCGUUCGACg -3' miRNA: 3'- -GGCG--------------CGCaCUGUgGUAGCGCGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 151085 | 0.68 | 0.867084 |
Target: 5'- cCUGCGCGggccuggUGGCGCC--CGaGCUCGGCg -3' miRNA: 3'- -GGCGCGC-------ACUGUGGuaGCgCGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 149421 | 0.68 | 0.860608 |
Target: 5'- aCCGC-CGUGaggaacgggaGCAgCA-CGCGCUCGAUc -3' miRNA: 3'- -GGCGcGCAC----------UGUgGUaGCGCGAGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 143468 | 0.68 | 0.881583 |
Target: 5'- uCUGCGUcgucGUGACGCCcgUGCGuCUgGAUc -3' miRNA: 3'- -GGCGCG----CACUGUGGuaGCGC-GAgCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 142510 | 0.7 | 0.779461 |
Target: 5'- gCUGCGCGUcGACACCGUgucagcgaCGCGgUuucaCGACg -3' miRNA: 3'- -GGCGCGCA-CUGUGGUA--------GCGCgA----GCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 142406 | 0.68 | 0.881583 |
Target: 5'- cUCGCGCG-GGCcaucuuucgccuGCCggCGCGC-CGGCu -3' miRNA: 3'- -GGCGCGCaCUG------------UGGuaGCGCGaGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 137482 | 0.67 | 0.900751 |
Target: 5'- gCGCGCGUGcgcGCGCCcgcccgcccGUaCGCGCgcgCGAg -3' miRNA: 3'- gGCGCGCAC---UGUGG---------UA-GCGCGa--GCUg -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 129711 | 0.66 | 0.928459 |
Target: 5'- aCGCgGUGUGGCugCGcgaagacaUCGCGgCUCGuGCg -3' miRNA: 3'- gGCG-CGCACUGugGU--------AGCGC-GAGC-UG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 129682 | 0.66 | 0.942488 |
Target: 5'- uCCGCGCuauACGCCAggGCGUcuUCGAUu -3' miRNA: 3'- -GGCGCGcacUGUGGUagCGCG--AGCUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 126569 | 0.67 | 0.912479 |
Target: 5'- -gGCGCGUGGCGCagcagcaCGCGCagGAa -3' miRNA: 3'- ggCGCGCACUGUGgua----GCGCGagCUg -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 125647 | 0.7 | 0.761559 |
Target: 5'- gCCGcCGCGUGGCguguGCCAU-GUGCUCccuGACg -3' miRNA: 3'- -GGC-GCGCACUG----UGGUAgCGCGAG---CUG- -5' |
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16192 | 3' | -57.5 | NC_004065.1 | + | 124240 | 0.74 | 0.569911 |
Target: 5'- aUCGCgGCGUaACAgCAUCGCGCUCcGCa -3' miRNA: 3'- -GGCG-CGCAcUGUgGUAGCGCGAGcUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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