miRNA display CGI


Results 61 - 80 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16192 3' -57.5 NC_004065.1 + 118500 0.66 0.933351
Target:  5'- gCUGCG-GUGGgGCCuGUCGCucggGUUCGGCa -3'
miRNA:   3'- -GGCGCgCACUgUGG-UAGCG----CGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 114972 0.69 0.821987
Target:  5'- cUCGCGC---GCGCCGUUGCcCUCGGCc -3'
miRNA:   3'- -GGCGCGcacUGUGGUAGCGcGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 114460 0.67 0.900751
Target:  5'- aCCGC-CGUcuCACCAUCGCgGCggUGGCg -3'
miRNA:   3'- -GGCGcGCAcuGUGGUAGCG-CGa-GCUG- -5'
16192 3' -57.5 NC_004065.1 + 113924 0.67 0.912479
Target:  5'- aUCGCGCGUGuCGacgaCGcgGCGCUCGGg -3'
miRNA:   3'- -GGCGCGCACuGUg---GUagCGCGAGCUg -5'
16192 3' -57.5 NC_004065.1 + 111913 0.71 0.696042
Target:  5'- uCCGCGCGgcgacgagaGACGCCAugggcgccgccgUCGCGgUgGACg -3'
miRNA:   3'- -GGCGCGCa--------CUGUGGU------------AGCGCgAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 110697 0.68 0.874787
Target:  5'- gUGUGaCGUGAgcCGCCGcCGCGaCUCGGCc -3'
miRNA:   3'- gGCGC-GCACU--GUGGUaGCGC-GAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 109919 0.67 0.912479
Target:  5'- uCCGcCGCG-GcCGCCGUCGCGUccCGGg -3'
miRNA:   3'- -GGC-GCGCaCuGUGGUAGCGCGa-GCUg -5'
16192 3' -57.5 NC_004065.1 + 109542 0.66 0.928458
Target:  5'- cCCGgGCacGACACCGUCGUcagCGACc -3'
miRNA:   3'- -GGCgCGcaCUGUGGUAGCGcgaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 109405 0.67 0.903165
Target:  5'- gCCGCgGCG-GACGCCAcgagcuacucgauccUCGUGCaccCGGCc -3'
miRNA:   3'- -GGCG-CGCaCUGUGGU---------------AGCGCGa--GCUG- -5'
16192 3' -57.5 NC_004065.1 + 108010 0.66 0.931906
Target:  5'- gCCGCGUGaGACACCGucugguuagaggauUCGUcguGC-CGGCa -3'
miRNA:   3'- -GGCGCGCaCUGUGGU--------------AGCG---CGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 106437 0.75 0.513105
Target:  5'- cCCGCGCG-GGCGCuCGUCGUcgauGCUgGGCg -3'
miRNA:   3'- -GGCGCGCaCUGUG-GUAGCG----CGAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 106271 0.72 0.657359
Target:  5'- gCGCGCGgcGCACCGagGUGCUgGACu -3'
miRNA:   3'- gGCGCGCacUGUGGUagCGCGAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 105543 0.68 0.848724
Target:  5'- uCCGCGCGgcccugGAC-CCGgcgcagcggcacggCGCGCcgUCGGCg -3'
miRNA:   3'- -GGCGCGCa-----CUGuGGUa-------------GCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 105287 0.66 0.933351
Target:  5'- gCCGUGC-UGAacaACCA-CGCGUgCGGCg -3'
miRNA:   3'- -GGCGCGcACUg--UGGUaGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 103849 0.66 0.928459
Target:  5'- aCGC-CGUGACgGCgAUCGCGCaccacgCGAUc -3'
miRNA:   3'- gGCGcGCACUG-UGgUAGCGCGa-----GCUG- -5'
16192 3' -57.5 NC_004065.1 + 103753 0.67 0.888178
Target:  5'- uUCGCGCGgcggGGCcuccggACCGUCGCGCa---- -3'
miRNA:   3'- -GGCGCGCa---CUG------UGGUAGCGCGagcug -5'
16192 3' -57.5 NC_004065.1 + 103540 0.71 0.696042
Target:  5'- aCGCGgGUGcagcGCGCCAacaUCGCGCagGGCu -3'
miRNA:   3'- gGCGCgCAC----UGUGGU---AGCGCGagCUG- -5'
16192 3' -57.5 NC_004065.1 + 103455 0.67 0.888178
Target:  5'- cCUGCGCGUGcugcuGCGCCA-CGCGCcccCGuGCu -3'
miRNA:   3'- -GGCGCGCAC-----UGUGGUaGCGCGa--GC-UG- -5'
16192 3' -57.5 NC_004065.1 + 101575 0.71 0.696042
Target:  5'- aUCGCGCccgcgGACGCCuccgcCGCGCUCaGACu -3'
miRNA:   3'- -GGCGCGca---CUGUGGua---GCGCGAG-CUG- -5'
16192 3' -57.5 NC_004065.1 + 101435 0.7 0.761559
Target:  5'- -gGCGCGUGcggauGCGCCuUCGCcGC-CGACg -3'
miRNA:   3'- ggCGCGCAC-----UGUGGuAGCG-CGaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.