miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16192 3' -57.5 NC_004065.1 + 92049 0.68 0.874787
Target:  5'- gCGCGCucgaGGCAUCucacgCGCGCUCGGa -3'
miRNA:   3'- gGCGCGca--CUGUGGua---GCGCGAGCUg -5'
16192 3' -57.5 NC_004065.1 + 229673 0.69 0.83005
Target:  5'- gUGgGCGUcggGGCGCgCGUC-CGCUCGGCg -3'
miRNA:   3'- gGCgCGCA---CUGUG-GUAGcGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 92082 0.69 0.83795
Target:  5'- gCCGCGCGUuGCGCCAgcaGCuccgaGCcCGGCg -3'
miRNA:   3'- -GGCGCGCAcUGUGGUag-CG-----CGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 163432 0.69 0.83795
Target:  5'- gCCGCG-GUGGcCGCCGcCGUGCagUCGGCc -3'
miRNA:   3'- -GGCGCgCACU-GUGGUaGCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 43105 0.68 0.845681
Target:  5'- uCCGCGacccGGCGCCGaucCGCGCUCG-Cg -3'
miRNA:   3'- -GGCGCgca-CUGUGGUa--GCGCGAGCuG- -5'
16192 3' -57.5 NC_004065.1 + 149421 0.68 0.860608
Target:  5'- aCCGC-CGUGaggaacgggaGCAgCA-CGCGCUCGAUc -3'
miRNA:   3'- -GGCGcGCAC----------UGUgGUaGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 151085 0.68 0.867084
Target:  5'- cCUGCGCGggccuggUGGCGCC--CGaGCUCGGCg -3'
miRNA:   3'- -GGCGCGC-------ACUGUGGuaGCgCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 200529 0.68 0.867794
Target:  5'- gCCGCGCacagGGCGuCCAUgGCGagggCGACg -3'
miRNA:   3'- -GGCGCGca--CUGU-GGUAgCGCga--GCUG- -5'
16192 3' -57.5 NC_004065.1 + 70718 0.68 0.867794
Target:  5'- cCUGCGCacggacacggugGUGACGCugaacggcauCAUC-CGCUCGGCg -3'
miRNA:   3'- -GGCGCG------------CACUGUG----------GUAGcGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 225656 0.7 0.788236
Target:  5'- cCCGC-CGc--CGCCGUCGCGCUCcACg -3'
miRNA:   3'- -GGCGcGCacuGUGGUAGCGCGAGcUG- -5'
16192 3' -57.5 NC_004065.1 + 170284 0.7 0.785616
Target:  5'- gCCaCGCGgucGGCACCAUCGcCGCcgggucgguaaacaUCGGCa -3'
miRNA:   3'- -GGcGCGCa--CUGUGGUAGC-GCG--------------AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 142510 0.7 0.779461
Target:  5'- gCUGCGCGUcGACACCGUgucagcgaCGCGgUuucaCGACg -3'
miRNA:   3'- -GGCGCGCA-CUGUGGUA--------GCGCgA----GCUG- -5'
16192 3' -57.5 NC_004065.1 + 67138 0.74 0.569911
Target:  5'- gCGCGCGccugGACGCgAUCGCGgaCGAg -3'
miRNA:   3'- gGCGCGCa---CUGUGgUAGCGCgaGCUg -5'
16192 3' -57.5 NC_004065.1 + 151409 0.73 0.605723
Target:  5'- aCCGCguucaccucaggcgGCGcGACGaCGUCGCGUUCGACg -3'
miRNA:   3'- -GGCG--------------CGCaCUGUgGUAGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 17787 0.73 0.628127
Target:  5'- -aGCGgGUG--GCCGUCGCGUUUGGCg -3'
miRNA:   3'- ggCGCgCACugUGGUAGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 193726 0.73 0.628127
Target:  5'- gCGaucaGCGUcgaaGGCGCCAUCGC-CUCGGCu -3'
miRNA:   3'- gGCg---CGCA----CUGUGGUAGCGcGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 74717 0.71 0.713224
Target:  5'- -aGCGCG-GGCGCCugcgacaguaGCGUUCGACg -3'
miRNA:   3'- ggCGCGCaCUGUGGuag-------CGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 96969 0.71 0.733945
Target:  5'- gCCGCGCcUGcuGCGCCggccguccGUCGCGCUgcugCGACg -3'
miRNA:   3'- -GGCGCGcAC--UGUGG--------UAGCGCGA----GCUG- -5'
16192 3' -57.5 NC_004065.1 + 88965 0.7 0.752448
Target:  5'- cUCGCGCGUGAUggugGCCAccuggggCGC-CUUGACg -3'
miRNA:   3'- -GGCGCGCACUG----UGGUa------GCGcGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 125647 0.7 0.761559
Target:  5'- gCCGcCGCGUGGCguguGCCAU-GUGCUCccuGACg -3'
miRNA:   3'- -GGC-GCGCACUG----UGGUAgCGCGAG---CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.