miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16192 3' -57.5 NC_004065.1 + 74717 0.71 0.713224
Target:  5'- -aGCGCG-GGCGCCugcgacaguaGCGUUCGACg -3'
miRNA:   3'- ggCGCGCaCUGUGGuag-------CGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 193726 0.73 0.628127
Target:  5'- gCGaucaGCGUcgaaGGCGCCAUCGC-CUCGGCu -3'
miRNA:   3'- gGCg---CGCA----CUGUGGUAGCGcGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 17787 0.73 0.628127
Target:  5'- -aGCGgGUG--GCCGUCGCGUUUGGCg -3'
miRNA:   3'- ggCGCgCACugUGGUAGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 151409 0.73 0.605723
Target:  5'- aCCGCguucaccucaggcgGCGcGACGaCGUCGCGUUCGACg -3'
miRNA:   3'- -GGCG--------------CGCaCUGUgGUAGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 67138 0.74 0.569911
Target:  5'- gCGCGCGccugGACGCgAUCGCGgaCGAg -3'
miRNA:   3'- gGCGCGCa---CUGUGgUAGCGCgaGCUg -5'
16192 3' -57.5 NC_004065.1 + 163432 0.69 0.83795
Target:  5'- gCCGCG-GUGGcCGCCGcCGUGCagUCGGCc -3'
miRNA:   3'- -GGCGCgCACU-GUGGUaGCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 43105 0.68 0.845681
Target:  5'- uCCGCGacccGGCGCCGaucCGCGCUCG-Cg -3'
miRNA:   3'- -GGCGCgca-CUGUGGUa--GCGCGAGCuG- -5'
16192 3' -57.5 NC_004065.1 + 29916 0.67 0.894568
Target:  5'- cCCGCGCGaagu-CC-UCGgGCUCGAUa -3'
miRNA:   3'- -GGCGCGCacuguGGuAGCgCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 169567 0.67 0.894568
Target:  5'- uCUGCGCGcUGuugcCGCUGUCGCgGCUcCGGCc -3'
miRNA:   3'- -GGCGCGC-ACu---GUGGUAGCG-CGA-GCUG- -5'
16192 3' -57.5 NC_004065.1 + 54663 0.67 0.894568
Target:  5'- gCCGCagauuCGUGAcCACCAgUCGCGUggUGGCa -3'
miRNA:   3'- -GGCGc----GCACU-GUGGU-AGCGCGa-GCUG- -5'
16192 3' -57.5 NC_004065.1 + 103753 0.67 0.888178
Target:  5'- uUCGCGCGgcggGGCcuccggACCGUCGCGCa---- -3'
miRNA:   3'- -GGCGCGCa---CUG------UGGUAGCGCGagcug -5'
16192 3' -57.5 NC_004065.1 + 12623 0.67 0.888178
Target:  5'- -aGCGCGUcGAgA-CGUCGCGgUUCGACa -3'
miRNA:   3'- ggCGCGCA-CUgUgGUAGCGC-GAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 143468 0.68 0.881583
Target:  5'- uCUGCGUcgucGUGACGCCcgUGCGuCUgGAUc -3'
miRNA:   3'- -GGCGCG----CACUGUGGuaGCGC-GAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 142406 0.68 0.881583
Target:  5'- cUCGCGCG-GGCcaucuuucgccuGCCggCGCGC-CGGCu -3'
miRNA:   3'- -GGCGCGCaCUG------------UGGuaGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 110697 0.68 0.874787
Target:  5'- gUGUGaCGUGAgcCGCCGcCGCGaCUCGGCc -3'
miRNA:   3'- gGCGC-GCACU--GUGGUaGCGC-GAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 92049 0.68 0.874787
Target:  5'- gCGCGCucgaGGCAUCucacgCGCGCUCGGa -3'
miRNA:   3'- gGCGCGca--CUGUGGua---GCGCGAGCUg -5'
16192 3' -57.5 NC_004065.1 + 70718 0.68 0.867794
Target:  5'- cCUGCGCacggacacggugGUGACGCugaacggcauCAUC-CGCUCGGCg -3'
miRNA:   3'- -GGCGCG------------CACUGUG----------GUAGcGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 200529 0.68 0.867794
Target:  5'- gCCGCGCacagGGCGuCCAUgGCGagggCGACg -3'
miRNA:   3'- -GGCGCGca--CUGU-GGUAgCGCga--GCUG- -5'
16192 3' -57.5 NC_004065.1 + 151085 0.68 0.867084
Target:  5'- cCUGCGCGggccuggUGGCGCC--CGaGCUCGGCg -3'
miRNA:   3'- -GGCGCGC-------ACUGUGGuaGCgCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 149421 0.68 0.860608
Target:  5'- aCCGC-CGUGaggaacgggaGCAgCA-CGCGCUCGAUc -3'
miRNA:   3'- -GGCGcGCAC----------UGUgGUaGCGCGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.