miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16192 3' -57.5 NC_004065.1 + 151803 0.78 0.330827
Target:  5'- gUGCGCGUacaGCCAgaaaUCGCGCUCGACg -3'
miRNA:   3'- gGCGCGCAcugUGGU----AGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 111913 0.71 0.696042
Target:  5'- uCCGCGCGgcgacgagaGACGCCAugggcgccgccgUCGCGgUgGACg -3'
miRNA:   3'- -GGCGCGCa--------CUGUGGU------------AGCGCgAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 87696 0.71 0.72457
Target:  5'- gCCGCcgGCGUucGAgACC-UCGCGgUCGACg -3'
miRNA:   3'- -GGCG--CGCA--CUgUGGuAGCGCgAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 192312 0.66 0.942488
Target:  5'- aCGCGCGUGuccggGCACgA-CGCGUcgaUCGAg -3'
miRNA:   3'- gGCGCGCAC-----UGUGgUaGCGCG---AGCUg -5'
16192 3' -57.5 NC_004065.1 + 124240 0.74 0.569911
Target:  5'- aUCGCgGCGUaACAgCAUCGCGCUCcGCa -3'
miRNA:   3'- -GGCG-CGCAcUGUgGUAGCGCGAGcUG- -5'
16192 3' -57.5 NC_004065.1 + 152826 0.74 0.569911
Target:  5'- gCCGUGCGgGGCGCCGcCGCGCacuugUGGCa -3'
miRNA:   3'- -GGCGCGCaCUGUGGUaGCGCGa----GCUG- -5'
16192 3' -57.5 NC_004065.1 + 183295 0.73 0.58922
Target:  5'- -aGCGCGUG-CGCC-UCGUGCgCGACc -3'
miRNA:   3'- ggCGCGCACuGUGGuAGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 38718 0.73 0.608642
Target:  5'- aCGCGCGgccGGCACCAUCcUGCUCcGCc -3'
miRNA:   3'- gGCGCGCa--CUGUGGUAGcGCGAGcUG- -5'
16192 3' -57.5 NC_004065.1 + 187163 0.73 0.628128
Target:  5'- -gGUGCGUGGCGuCCcUCGCGCUCu-- -3'
miRNA:   3'- ggCGCGCACUGU-GGuAGCGCGAGcug -5'
16192 3' -57.5 NC_004065.1 + 103540 0.71 0.696042
Target:  5'- aCGCGgGUGcagcGCGCCAacaUCGCGCagGGCu -3'
miRNA:   3'- gGCGCgCAC----UGUGGU---AGCGCGagCUG- -5'
16192 3' -57.5 NC_004065.1 + 165476 0.72 0.667076
Target:  5'- aCCGCGUccagcuguGUGuCGCCGUCGCGC-CG-Ca -3'
miRNA:   3'- -GGCGCG--------CACuGUGGUAGCGCGaGCuG- -5'
16192 3' -57.5 NC_004065.1 + 28012 0.73 0.612536
Target:  5'- -aGCGCcgaggagGACGCCAUCGCGUuggcggccaacgaccUCGACg -3'
miRNA:   3'- ggCGCGca-----CUGUGGUAGCGCG---------------AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 157557 0.77 0.391401
Target:  5'- gCCGCGCc-GACACCGUCuCGCUCGuCg -3'
miRNA:   3'- -GGCGCGcaCUGUGGUAGcGCGAGCuG- -5'
16192 3' -57.5 NC_004065.1 + 91910 0.72 0.676767
Target:  5'- aCCGaCGCGau-CGCCGUCGCGgUcCGACg -3'
miRNA:   3'- -GGC-GCGCacuGUGGUAGCGCgA-GCUG- -5'
16192 3' -57.5 NC_004065.1 + 106437 0.75 0.513105
Target:  5'- cCCGCGCG-GGCGCuCGUCGUcgauGCUgGGCg -3'
miRNA:   3'- -GGCGCGCaCUGUG-GUAGCG----CGAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 162264 0.73 0.608642
Target:  5'- cCCGCGCcguucGUcACGCCGUCGgacgcggcgcCGCUCGGCa -3'
miRNA:   3'- -GGCGCG-----CAcUGUGGUAGC----------GCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 101575 0.71 0.696042
Target:  5'- aUCGCGCccgcgGACGCCuccgcCGCGCUCaGACu -3'
miRNA:   3'- -GGCGCGca---CUGUGGua---GCGCGAG-CUG- -5'
16192 3' -57.5 NC_004065.1 + 198957 0.71 0.70561
Target:  5'- gCCGCcaugaggaagGCGU-ACGCCGUCaacagacuccugGCGCUCGGCa -3'
miRNA:   3'- -GGCG----------CGCAcUGUGGUAG------------CGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 229607 0.74 0.550762
Target:  5'- gUGCGCGUGACACUAcaugucucUCGCGC-CG-Cg -3'
miRNA:   3'- gGCGCGCACUGUGGU--------AGCGCGaGCuG- -5'
16192 3' -57.5 NC_004065.1 + 29228 0.74 0.569911
Target:  5'- cCCGCGCcgaGACGCCGUCGCccgccaccgccGCgCGACg -3'
miRNA:   3'- -GGCGCGca-CUGUGGUAGCG-----------CGaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.