miRNA display CGI


Results 21 - 40 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16192 3' -57.5 NC_004065.1 + 82583 0.7 0.770566
Target:  5'- cCCGCagaacucguugGCGUccauGACGCCGUCGUGCUgcugGACg -3'
miRNA:   3'- -GGCG-----------CGCA----CUGUGGUAGCGCGAg---CUG- -5'
16192 3' -57.5 NC_004065.1 + 87696 0.71 0.72457
Target:  5'- gCCGCcgGCGUucGAgACC-UCGCGgUCGACg -3'
miRNA:   3'- -GGCG--CGCA--CUgUGGuAGCGCgAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 28012 0.73 0.612536
Target:  5'- -aGCGCcgaggagGACGCCAUCGCGUuggcggccaacgaccUCGACg -3'
miRNA:   3'- ggCGCGca-----CUGUGGUAGCGCG---------------AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 229607 0.74 0.550762
Target:  5'- gUGCGCGUGACACUAcaugucucUCGCGC-CG-Cg -3'
miRNA:   3'- gGCGCGCACUGUGGU--------AGCGCGaGCuG- -5'
16192 3' -57.5 NC_004065.1 + 114972 0.69 0.821987
Target:  5'- cUCGCGC---GCGCCGUUGCcCUCGGCc -3'
miRNA:   3'- -GGCGCGcacUGUGGUAGCGcGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 33621 0.69 0.796884
Target:  5'- gCCG-GCaUGGCcaagGCCAUCGCGUUCGGg -3'
miRNA:   3'- -GGCgCGcACUG----UGGUAGCGCGAGCUg -5'
16192 3' -57.5 NC_004065.1 + 111913 0.71 0.696042
Target:  5'- uCCGCGCGgcgacgagaGACGCCAugggcgccgccgUCGCGgUgGACg -3'
miRNA:   3'- -GGCGCGCa--------CUGUGGU------------AGCGCgAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 106437 0.75 0.513105
Target:  5'- cCCGCGCG-GGCGCuCGUCGUcgauGCUgGGCg -3'
miRNA:   3'- -GGCGCGCaCUGUG-GUAGCG----CGAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 71488 0.7 0.788236
Target:  5'- gCGUGCGagagauGCGCCgGUCGCGCUCG-Ca -3'
miRNA:   3'- gGCGCGCac----UGUGG-UAGCGCGAGCuG- -5'
16192 3' -57.5 NC_004065.1 + 157557 0.77 0.391401
Target:  5'- gCCGCGCc-GACACCGUCuCGCUCGuCg -3'
miRNA:   3'- -GGCGCGcaCUGUGGUAGcGCGAGCuG- -5'
16192 3' -57.5 NC_004065.1 + 198957 0.71 0.70561
Target:  5'- gCCGCcaugaggaagGCGU-ACGCCGUCaacagacuccugGCGCUCGGCa -3'
miRNA:   3'- -GGCG----------CGCAcUGUGGUAG------------CGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 163016 0.7 0.779461
Target:  5'- cCCGCGCGgGGC-CCGUacacggGCGC-CGACu -3'
miRNA:   3'- -GGCGCGCaCUGuGGUAg-----CGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 91910 0.72 0.676767
Target:  5'- aCCGaCGCGau-CGCCGUCGCGgUcCGACg -3'
miRNA:   3'- -GGC-GCGCacuGUGGUAGCGCgA-GCUG- -5'
16192 3' -57.5 NC_004065.1 + 187163 0.73 0.628128
Target:  5'- -gGUGCGUGGCGuCCcUCGCGCUCu-- -3'
miRNA:   3'- ggCGCGCACUGU-GGuAGCGCGAGcug -5'
16192 3' -57.5 NC_004065.1 + 183295 0.73 0.58922
Target:  5'- -aGCGCGUG-CGCC-UCGUGCgCGACc -3'
miRNA:   3'- ggCGCGCACuGUGGuAGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 124240 0.74 0.569911
Target:  5'- aUCGCgGCGUaACAgCAUCGCGCUCcGCa -3'
miRNA:   3'- -GGCG-CGCAcUGUgGUAGCGCGAGcUG- -5'
16192 3' -57.5 NC_004065.1 + 87635 0.68 0.845681
Target:  5'- cCCGCGCGa-GCGCgAacugCGCGCcuUCGACa -3'
miRNA:   3'- -GGCGCGCacUGUGgUa---GCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 161098 0.69 0.83005
Target:  5'- uCCGCGCGcaacuucuUGAUcUC--CGCGCUCGGCg -3'
miRNA:   3'- -GGCGCGC--------ACUGuGGuaGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 596 0.69 0.805396
Target:  5'- cCCGUG-GUGGCagACCAguuaCGCGCUCaGGCu -3'
miRNA:   3'- -GGCGCgCACUG--UGGUa---GCGCGAG-CUG- -5'
16192 3' -57.5 NC_004065.1 + 168335 0.69 0.796884
Target:  5'- gCCGCGgaCGUGACGcgcugcggacCCcUCGCGCUCuACa -3'
miRNA:   3'- -GGCGC--GCACUGU----------GGuAGCGCGAGcUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.