miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16192 3' -57.5 NC_004065.1 + 96153 0.69 0.821987
Target:  5'- uCCGCcCGgcGCGCCGUCuuGCGaCUCGACg -3'
miRNA:   3'- -GGCGcGCacUGUGGUAG--CGC-GAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 111913 0.71 0.696042
Target:  5'- uCCGCGCGgcgacgagaGACGCCAugggcgccgccgUCGCGgUgGACg -3'
miRNA:   3'- -GGCGCGCa--------CUGUGGU------------AGCGCgAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 106437 0.75 0.513105
Target:  5'- cCCGCGCG-GGCGCuCGUCGUcgauGCUgGGCg -3'
miRNA:   3'- -GGCGCGCaCUGUG-GUAGCG----CGAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 79628 0.69 0.813767
Target:  5'- gCGCGCG-GACGCUGcgggCGUGCgugUCGGCg -3'
miRNA:   3'- gGCGCGCaCUGUGGUa---GCGCG---AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 157557 0.77 0.391401
Target:  5'- gCCGCGCc-GACACCGUCuCGCUCGuCg -3'
miRNA:   3'- -GGCGCGcaCUGUGGUAGcGCGAGCuG- -5'
16192 3' -57.5 NC_004065.1 + 176768 0.67 0.894569
Target:  5'- aCGUGaauuCGUucGACACgAUCGCGC-CGGCg -3'
miRNA:   3'- gGCGC----GCA--CUGUGgUAGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 124240 0.74 0.569911
Target:  5'- aUCGCgGCGUaACAgCAUCGCGCUCcGCa -3'
miRNA:   3'- -GGCG-CGCAcUGUgGUAGCGCGAGcUG- -5'
16192 3' -57.5 NC_004065.1 + 94419 0.67 0.892673
Target:  5'- aCC-CGCGUGACgGCCGUCucccagcggcgcguGUGUUCGAa -3'
miRNA:   3'- -GGcGCGCACUG-UGGUAG--------------CGCGAGCUg -5'
16192 3' -57.5 NC_004065.1 + 169680 0.68 0.881583
Target:  5'- aCCGUGC---GCACCAaCGCGUaCGGCg -3'
miRNA:   3'- -GGCGCGcacUGUGGUaGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 153655 0.68 0.874787
Target:  5'- uCCGCG-GcGGCGCCggCGCGauggagaUCGACa -3'
miRNA:   3'- -GGCGCgCaCUGUGGuaGCGCg------AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 170865 0.68 0.867084
Target:  5'- gCCGCGCGcccgaucgGACucucgccgucgucGCC-UCGCGCUCG-Cu -3'
miRNA:   3'- -GGCGCGCa-------CUG-------------UGGuAGCGCGAGCuG- -5'
16192 3' -57.5 NC_004065.1 + 87635 0.68 0.845681
Target:  5'- cCCGCGCGa-GCGCgAacugCGCGCcuUCGACa -3'
miRNA:   3'- -GGCGCGCacUGUGgUa---GCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 161098 0.69 0.83005
Target:  5'- uCCGCGCGcaacuucuUGAUcUC--CGCGCUCGGCg -3'
miRNA:   3'- -GGCGCGC--------ACUGuGGuaGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 65461 0.69 0.805396
Target:  5'- -aGCGCGaagcggucGGCGCCGcCGCcgGCUCGACa -3'
miRNA:   3'- ggCGCGCa-------CUGUGGUaGCG--CGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 71488 0.7 0.788236
Target:  5'- gCGUGCGagagauGCGCCgGUCGCGCUCG-Ca -3'
miRNA:   3'- gGCGCGCac----UGUGG-UAGCGCGAGCuG- -5'
16192 3' -57.5 NC_004065.1 + 82583 0.7 0.770566
Target:  5'- cCCGCagaacucguugGCGUccauGACGCCGUCGUGCUgcugGACg -3'
miRNA:   3'- -GGCG-----------CGCA----CUGUGGUAGCGCGAg---CUG- -5'
16192 3' -57.5 NC_004065.1 + 87696 0.71 0.72457
Target:  5'- gCCGCcgGCGUucGAgACC-UCGCGgUCGACg -3'
miRNA:   3'- -GGCG--CGCA--CUgUGGuAGCGCgAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 91910 0.72 0.676767
Target:  5'- aCCGaCGCGau-CGCCGUCGCGgUcCGACg -3'
miRNA:   3'- -GGC-GCGCacuGUGGUAGCGCgA-GCUG- -5'
16192 3' -57.5 NC_004065.1 + 187163 0.73 0.628128
Target:  5'- -gGUGCGUGGCGuCCcUCGCGCUCu-- -3'
miRNA:   3'- ggCGCGCACUGU-GGuAGCGCGAGcug -5'
16192 3' -57.5 NC_004065.1 + 183295 0.73 0.58922
Target:  5'- -aGCGCGUG-CGCC-UCGUGCgCGACc -3'
miRNA:   3'- ggCGCGCACuGUGGuAGCGCGaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.