miRNA display CGI


Results 61 - 80 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16192 3' -57.5 NC_004065.1 + 35922 0.69 0.837951
Target:  5'- cCCGCG-GUcugcGACGCCucccuGUCGUGCUcCGACc -3'
miRNA:   3'- -GGCGCgCA----CUGUGG-----UAGCGCGA-GCUG- -5'
16192 3' -57.5 NC_004065.1 + 66650 0.68 0.853236
Target:  5'- uCgGCGCGgugGGCGCCcggcgaGUGUUCGACc -3'
miRNA:   3'- -GgCGCGCa--CUGUGGuag---CGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 163016 0.7 0.779461
Target:  5'- cCCGCGCGgGGC-CCGUacacggGCGC-CGACu -3'
miRNA:   3'- -GGCGCGCaCUGuGGUAg-----CGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 183825 0.7 0.787364
Target:  5'- uCCGCGCGguguuUGucguucggcccccACGCCGUCGCGUguUUGGCc -3'
miRNA:   3'- -GGCGCGC-----AC-------------UGUGGUAGCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 71488 0.7 0.788236
Target:  5'- gCGUGCGagagauGCGCCgGUCGCGCUCG-Ca -3'
miRNA:   3'- gGCGCGCac----UGUGG-UAGCGCGAGCuG- -5'
16192 3' -57.5 NC_004065.1 + 33621 0.69 0.796884
Target:  5'- gCCG-GCaUGGCcaagGCCAUCGCGUUCGGg -3'
miRNA:   3'- -GGCgCGcACUG----UGGUAGCGCGAGCUg -5'
16192 3' -57.5 NC_004065.1 + 160280 0.69 0.805396
Target:  5'- uCCgGCGCGUGcuuCGCCAggaUCGUuucGUUCGGCg -3'
miRNA:   3'- -GG-CGCGCACu--GUGGU---AGCG---CGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 596 0.69 0.805396
Target:  5'- cCCGUG-GUGGCagACCAguuaCGCGCUCaGGCu -3'
miRNA:   3'- -GGCGCgCACUG--UGGUa---GCGCGAG-CUG- -5'
16192 3' -57.5 NC_004065.1 + 96153 0.69 0.821987
Target:  5'- uCCGCcCGgcGCGCCGUCuuGCGaCUCGACg -3'
miRNA:   3'- -GGCGcGCacUGUGGUAG--CGC-GAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 114972 0.69 0.821987
Target:  5'- cUCGCGC---GCGCCGUUGCcCUCGGCc -3'
miRNA:   3'- -GGCGCGcacUGUGGUAGCGcGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 60713 0.66 0.938027
Target:  5'- gCGCGCGgGACuuaCAaCGCGCU-GGCg -3'
miRNA:   3'- gGCGCGCaCUGug-GUaGCGCGAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 661 0.66 0.933351
Target:  5'- gCCGCGCGUagcgaGCACCcgcUCGCuGgUCGAg -3'
miRNA:   3'- -GGCGCGCAc----UGUGGu--AGCG-CgAGCUg -5'
16192 3' -57.5 NC_004065.1 + 170304 0.68 0.874097
Target:  5'- uCCGCGaCG-GuCGCCGUgCGCcgcggccGCUCGGCg -3'
miRNA:   3'- -GGCGC-GCaCuGUGGUA-GCG-------CGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 88474 0.68 0.874787
Target:  5'- uUGCGCGcGACGCCGaagagCGCGUccUCGGa -3'
miRNA:   3'- gGCGCGCaCUGUGGUa----GCGCG--AGCUg -5'
16192 3' -57.5 NC_004065.1 + 94419 0.67 0.892673
Target:  5'- aCC-CGCGUGACgGCCGUCucccagcggcgcguGUGUUCGAa -3'
miRNA:   3'- -GGcGCGCACUG-UGGUAG--------------CGCGAGCUg -5'
16192 3' -57.5 NC_004065.1 + 176768 0.67 0.894569
Target:  5'- aCGUGaauuCGUucGACACgAUCGCGC-CGGCg -3'
miRNA:   3'- gGCGC----GCA--CUGUGgUAGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 85542 0.67 0.906722
Target:  5'- uUCGUGaagacGGCGCaCGUCGUGUUCGGCg -3'
miRNA:   3'- -GGCGCgca--CUGUG-GUAGCGCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 198008 0.66 0.917478
Target:  5'- aCUGCGCGaUGGCcucggagGCgGUCGCGgUCGcCg -3'
miRNA:   3'- -GGCGCGC-ACUG-------UGgUAGCGCgAGCuG- -5'
16192 3' -57.5 NC_004065.1 + 80277 0.66 0.923349
Target:  5'- aCGCGCGagcuGCGCgA-CGCGCUgGACc -3'
miRNA:   3'- gGCGCGCac--UGUGgUaGCGCGAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 205254 0.66 0.928459
Target:  5'- -gGCGCGaGAUACC--CGCGC-CGGCc -3'
miRNA:   3'- ggCGCGCaCUGUGGuaGCGCGaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.