miRNA display CGI


Results 81 - 100 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16192 3' -57.5 NC_004065.1 + 170304 0.68 0.874097
Target:  5'- uCCGCGaCG-GuCGCCGUgCGCcgcggccGCUCGGCg -3'
miRNA:   3'- -GGCGC-GCaCuGUGGUA-GCG-------CGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 197072 0.68 0.867794
Target:  5'- gCCGCGaCGUcGACGCCcgcaucCGCGCgggagcCGACc -3'
miRNA:   3'- -GGCGC-GCA-CUGUGGua----GCGCGa-----GCUG- -5'
16192 3' -57.5 NC_004065.1 + 33474 0.66 0.923349
Target:  5'- uUCGCGgcCGUgGGCGCCuaCGCGC-CGGCa -3'
miRNA:   3'- -GGCGC--GCA-CUGUGGuaGCGCGaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 80277 0.66 0.923349
Target:  5'- aCGCGCGagcuGCGCgA-CGCGCUgGACc -3'
miRNA:   3'- gGCGCGCac--UGUGgUaGCGCGAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 197162 0.67 0.894569
Target:  5'- -aGCGCGaccUGuccauCGCCAaCGCGCUgGACc -3'
miRNA:   3'- ggCGCGC---ACu----GUGGUaGCGCGAgCUG- -5'
16192 3' -57.5 NC_004065.1 + 64887 0.66 0.933351
Target:  5'- gCGCGCGUcggagaagagcGGCGCCAgUCGCcggGCggGACg -3'
miRNA:   3'- gGCGCGCA-----------CUGUGGU-AGCG---CGagCUG- -5'
16192 3' -57.5 NC_004065.1 + 118500 0.66 0.933351
Target:  5'- gCUGCG-GUGGgGCCuGUCGCucggGUUCGGCa -3'
miRNA:   3'- -GGCGCgCACUgUGG-UAGCG----CGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 26732 0.67 0.900751
Target:  5'- uUCGCGCGacgauucgcGACACguCGUCGUGgaCGACg -3'
miRNA:   3'- -GGCGCGCa--------CUGUG--GUAGCGCgaGCUG- -5'
16192 3' -57.5 NC_004065.1 + 75871 0.66 0.935247
Target:  5'- uCCGCGCGUaGAU---GUCGCGCaggagggccugguacUCGGCc -3'
miRNA:   3'- -GGCGCGCA-CUGuggUAGCGCG---------------AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 194769 0.66 0.938027
Target:  5'- cUCGCGcCGUcccGAgACCggGUCGCGCagGGCg -3'
miRNA:   3'- -GGCGC-GCA---CUgUGG--UAGCGCGagCUG- -5'
16192 3' -57.5 NC_004065.1 + 114460 0.67 0.900751
Target:  5'- aCCGC-CGUcuCACCAUCGCgGCggUGGCg -3'
miRNA:   3'- -GGCGcGCAcuGUGGUAGCG-CGa-GCUG- -5'
16192 3' -57.5 NC_004065.1 + 29916 0.67 0.894568
Target:  5'- cCCGCGCGaagu-CC-UCGgGCUCGAUa -3'
miRNA:   3'- -GGCGCGCacuguGGuAGCgCGAGCUG- -5'
16192 3' -57.5 NC_004065.1 + 169567 0.67 0.894568
Target:  5'- uCUGCGCGcUGuugcCGCUGUCGCgGCUcCGGCc -3'
miRNA:   3'- -GGCGCGC-ACu---GUGGUAGCG-CGA-GCUG- -5'
16192 3' -57.5 NC_004065.1 + 153951 0.66 0.942488
Target:  5'- aCCGCGgagccugcgacuUGUcuGCGCCGUCGCGgUCGuCg -3'
miRNA:   3'- -GGCGC------------GCAc-UGUGGUAGCGCgAGCuG- -5'
16192 3' -57.5 NC_004065.1 + 129682 0.66 0.942488
Target:  5'- uCCGCGCuauACGCCAggGCGUcuUCGAUu -3'
miRNA:   3'- -GGCGCGcacUGUGGUagCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 88439 0.66 0.942488
Target:  5'- gCCGuCGCGUugGugGCgGUCGC-CUCGcGCa -3'
miRNA:   3'- -GGC-GCGCA--CugUGgUAGCGcGAGC-UG- -5'
16192 3' -57.5 NC_004065.1 + 33924 0.66 0.942488
Target:  5'- gCCGUugGCGUGGCgaGCCG-CGCGUUCu-- -3'
miRNA:   3'- -GGCG--CGCACUG--UGGUaGCGCGAGcug -5'
16192 3' -57.5 NC_004065.1 + 48608 0.66 0.941172
Target:  5'- gCUG-GCGaUGACACCGUCgacgagaaguauggGCGCgaccagCGACg -3'
miRNA:   3'- -GGCgCGC-ACUGUGGUAG--------------CGCGa-----GCUG- -5'
16192 3' -57.5 NC_004065.1 + 163432 0.69 0.83795
Target:  5'- gCCGCG-GUGGcCGCCGcCGUGCagUCGGCc -3'
miRNA:   3'- -GGCGCgCACU-GUGGUaGCGCG--AGCUG- -5'
16192 3' -57.5 NC_004065.1 + 92082 0.69 0.83795
Target:  5'- gCCGCGCGUuGCGCCAgcaGCuccgaGCcCGGCg -3'
miRNA:   3'- -GGCGCGCAcUGUGGUag-CG-----CGaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.