miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16193 5' -57.9 NC_004065.1 + 133221 0.66 0.923297
Target:  5'- aCAGCag---CCCGAGa-CCACGUCCAa -3'
miRNA:   3'- -GUCGagcuaGGGCUCcaGGUGCAGGU- -5'
16193 5' -57.9 NC_004065.1 + 120875 0.66 0.923297
Target:  5'- cCGGCUUG--CCCGGGGUCagggcgGCGUCUc -3'
miRNA:   3'- -GUCGAGCuaGGGCUCCAGg-----UGCAGGu -5'
16193 5' -57.9 NC_004065.1 + 159436 0.66 0.923297
Target:  5'- cCAGCUUcGUCuuGAGcUUCACGUUCAg -3'
miRNA:   3'- -GUCGAGcUAGggCUCcAGGUGCAGGU- -5'
16193 5' -57.9 NC_004065.1 + 185654 0.66 0.917945
Target:  5'- gCAGCUCGAagacgUCCCuGAGGUCgAucuucuCGUCg- -3'
miRNA:   3'- -GUCGAGCU-----AGGG-CUCCAGgU------GCAGgu -5'
16193 5' -57.9 NC_004065.1 + 224030 0.66 0.912376
Target:  5'- uCAGCaUCGuaggCCCGAGGgCCAUGacggCCGg -3'
miRNA:   3'- -GUCG-AGCua--GGGCUCCaGGUGCa---GGU- -5'
16193 5' -57.9 NC_004065.1 + 185998 0.66 0.906589
Target:  5'- uCGGCUCGGaCCCGGGGgguuguaaguaUCCugGagCAc -3'
miRNA:   3'- -GUCGAGCUaGGGCUCC-----------AGGugCagGU- -5'
16193 5' -57.9 NC_004065.1 + 122598 0.66 0.906589
Target:  5'- gGGCaCGAUCCagggcagcaCGAGGUCC-CaGUCCGa -3'
miRNA:   3'- gUCGaGCUAGG---------GCUCCAGGuG-CAGGU- -5'
16193 5' -57.9 NC_004065.1 + 51146 0.66 0.900588
Target:  5'- gCGGCgCGAcuuccaguacaUCUCGAGGaagcCCAUGUCCAc -3'
miRNA:   3'- -GUCGaGCU-----------AGGGCUCCa---GGUGCAGGU- -5'
16193 5' -57.9 NC_004065.1 + 149073 0.66 0.900588
Target:  5'- gGGCUCc--CCCGAGGUgCCugaaaaggACGUCCu -3'
miRNA:   3'- gUCGAGcuaGGGCUCCA-GG--------UGCAGGu -5'
16193 5' -57.9 NC_004065.1 + 198352 0.67 0.88795
Target:  5'- uCAGCUCG---CCGGGGUCCuuCG-CCAg -3'
miRNA:   3'- -GUCGAGCuagGGCUCCAGGu-GCaGGU- -5'
16193 5' -57.9 NC_004065.1 + 91392 0.67 0.88795
Target:  5'- cUAGCUCG-UCgCaGAGGacgUCUACGUCCGu -3'
miRNA:   3'- -GUCGAGCuAGgG-CUCC---AGGUGCAGGU- -5'
16193 5' -57.9 NC_004065.1 + 24080 0.67 0.860231
Target:  5'- gCGGCUCGAugaugaUgCCGAGGacgUCCAUGgcgCCGa -3'
miRNA:   3'- -GUCGAGCU------AgGGCUCC---AGGUGCa--GGU- -5'
16193 5' -57.9 NC_004065.1 + 136540 0.68 0.829503
Target:  5'- -uGCU-GGUCCUGGGGUCCGgGgagCCGa -3'
miRNA:   3'- guCGAgCUAGGGCUCCAGGUgCa--GGU- -5'
16193 5' -57.9 NC_004065.1 + 188560 0.68 0.813128
Target:  5'- cCAGCUCGAgCCCGgagagcAGGacgcucUCCACGgCCAg -3'
miRNA:   3'- -GUCGAGCUaGGGC------UCC------AGGUGCaGGU- -5'
16193 5' -57.9 NC_004065.1 + 114952 0.68 0.813128
Target:  5'- gAGC-CGA--CCGAGG-CCGCGUCCu -3'
miRNA:   3'- gUCGaGCUagGGCUCCaGGUGCAGGu -5'
16193 5' -57.9 NC_004065.1 + 202742 0.69 0.796152
Target:  5'- uCGGCUCGuGUCCCGAGcgccGUCCgaaccuccuacGCGUCUu -3'
miRNA:   3'- -GUCGAGC-UAGGGCUC----CAGG-----------UGCAGGu -5'
16193 5' -57.9 NC_004065.1 + 196216 0.69 0.778633
Target:  5'- cCAGCUUG-UCCgCGucGUcCCACGUCCGc -3'
miRNA:   3'- -GUCGAGCuAGG-GCucCA-GGUGCAGGU- -5'
16193 5' -57.9 NC_004065.1 + 113128 0.69 0.76969
Target:  5'- gCAGCUCGAUCCCGcGccCCAgCGUCa- -3'
miRNA:   3'- -GUCGAGCUAGGGCuCcaGGU-GCAGgu -5'
16193 5' -57.9 NC_004065.1 + 181373 0.69 0.760635
Target:  5'- uCGGCUCGAUCCCaucuucgCCACGUCg- -3'
miRNA:   3'- -GUCGAGCUAGGGcucca--GGUGCAGgu -5'
16193 5' -57.9 NC_004065.1 + 112684 0.69 0.760635
Target:  5'- aCGGCggacccCGAcaagCCGGGGUCCACGUUCGu -3'
miRNA:   3'- -GUCGa-----GCUag--GGCUCCAGGUGCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.