miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16198 3' -58.1 NC_004065.1 + 120355 0.66 0.894684
Target:  5'- cUCGGgGUaCGucGGCGCCugacguUCGCuCUCc -3'
miRNA:   3'- uAGUCgCA-GCuuCCGCGGu-----AGCG-GAG- -5'
16198 3' -58.1 NC_004065.1 + 115903 0.66 0.894684
Target:  5'- -gCGGC-UCGggGcCGUCGUCGgCCUCg -3'
miRNA:   3'- uaGUCGcAGCuuCcGCGGUAGC-GGAG- -5'
16198 3' -58.1 NC_004065.1 + 108725 0.66 0.894684
Target:  5'- -cCAGaa--GggGGCGCgCGUCGcCCUCa -3'
miRNA:   3'- uaGUCgcagCuuCCGCG-GUAGC-GGAG- -5'
16198 3' -58.1 NC_004065.1 + 127485 0.66 0.894684
Target:  5'- -cCGGCGccacCGAcgaggacaAGGCGCgCGUCGuCCUCu -3'
miRNA:   3'- uaGUCGCa---GCU--------UCCGCG-GUAGC-GGAG- -5'
16198 3' -58.1 NC_004065.1 + 18704 0.66 0.888164
Target:  5'- --gAGuCGUCGAAGGUGCCGcUGUCg- -3'
miRNA:   3'- uagUC-GCAGCUUCCGCGGUaGCGGag -5'
16198 3' -58.1 NC_004065.1 + 126597 0.66 0.888164
Target:  5'- --aGGUGUCGAucAGGCcgcgcuCCAUCGCgUCg -3'
miRNA:   3'- uagUCGCAGCU--UCCGc-----GGUAGCGgAG- -5'
16198 3' -58.1 NC_004065.1 + 43439 0.66 0.888164
Target:  5'- -gUAGCGUaCGGA-GCGCCGcCGuCCUCg -3'
miRNA:   3'- uaGUCGCA-GCUUcCGCGGUaGC-GGAG- -5'
16198 3' -58.1 NC_004065.1 + 6836 0.66 0.888164
Target:  5'- -cCA-CGUC-AGGGCGCCuuAUCGUCUCu -3'
miRNA:   3'- uaGUcGCAGcUUCCGCGG--UAGCGGAG- -5'
16198 3' -58.1 NC_004065.1 + 177405 0.66 0.885496
Target:  5'- --uGGCGaccugaguaaaaaaUCGAAGGCgagacaagcugucGCCAUCGCCg- -3'
miRNA:   3'- uagUCGC--------------AGCUUCCG-------------CGGUAGCGGag -5'
16198 3' -58.1 NC_004065.1 + 218583 0.66 0.884149
Target:  5'- --gGGCG-CGGAGGCGCUcucuauacagauucaGUCGUCUg -3'
miRNA:   3'- uagUCGCaGCUUCCGCGG---------------UAGCGGAg -5'
16198 3' -58.1 NC_004065.1 + 41255 0.66 0.881431
Target:  5'- gAUCAGCGUgUGGGcGGuCGCgAUCGCCc- -3'
miRNA:   3'- -UAGUCGCA-GCUU-CC-GCGgUAGCGGag -5'
16198 3' -58.1 NC_004065.1 + 154166 0.66 0.881431
Target:  5'- -gCGGCGgCGgcGGCuguugcuggcucGCCGUCGCCa- -3'
miRNA:   3'- uaGUCGCaGCuuCCG------------CGGUAGCGGag -5'
16198 3' -58.1 NC_004065.1 + 163887 0.66 0.881431
Target:  5'- --uGGCGcCGGuccgcggcccAGcGCGCCAgCGCCUCg -3'
miRNA:   3'- uagUCGCaGCU----------UC-CGCGGUaGCGGAG- -5'
16198 3' -58.1 NC_004065.1 + 96763 0.66 0.881431
Target:  5'- --gGGCGacggCGGAGGCGgCAUCGCg-- -3'
miRNA:   3'- uagUCGCa---GCUUCCGCgGUAGCGgag -5'
16198 3' -58.1 NC_004065.1 + 135808 0.66 0.880746
Target:  5'- --uGGCGUCGGGaccaaauGGCGCCAauuuuccCGCCUa -3'
miRNA:   3'- uagUCGCAGCUU-------CCGCGGUa------GCGGAg -5'
16198 3' -58.1 NC_004065.1 + 179576 0.66 0.87729
Target:  5'- cUgGGCGcUGAagGGGCGCCAcgcgugugcgaccgCGCCUCg -3'
miRNA:   3'- uAgUCGCaGCU--UCCGCGGUa-------------GCGGAG- -5'
16198 3' -58.1 NC_004065.1 + 111324 0.66 0.874488
Target:  5'- cGUCGGCGUCaucuGGGUcaccGUgGUCGCCUg -3'
miRNA:   3'- -UAGUCGCAGcu--UCCG----CGgUAGCGGAg -5'
16198 3' -58.1 NC_004065.1 + 178431 0.66 0.874488
Target:  5'- uGUgGGCGUUGggGGC-CaCGUaGCCUCc -3'
miRNA:   3'- -UAgUCGCAGCuuCCGcG-GUAgCGGAG- -5'
16198 3' -58.1 NC_004065.1 + 210839 0.66 0.874488
Target:  5'- --gAGCGgcCGGAGGUGUCc-CGCCUCg -3'
miRNA:   3'- uagUCGCa-GCUUCCGCGGuaGCGGAG- -5'
16198 3' -58.1 NC_004065.1 + 202743 0.66 0.867341
Target:  5'- -gCGuCGUCGgcGGCGCCGccggucucuUCGuCCUCg -3'
miRNA:   3'- uaGUcGCAGCuuCCGCGGU---------AGC-GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.