Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16199 | 3' | -56.2 | NC_004065.1 | + | 92172 | 0.66 | 0.965145 |
Target: 5'- cGGCGGCGaucGACGCGGUCaaguUUCa--GCCGu -3' miRNA: 3'- -CCGCCGC---CUGUGCUAG----AAGgacUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 138247 | 0.66 | 0.965145 |
Target: 5'- -aUGGCGGACgACGAUCUcuccagCCUcGCCc -3' miRNA: 3'- ccGCCGCCUG-UGCUAGAa-----GGAcUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 142790 | 0.66 | 0.965145 |
Target: 5'- uGGCGcCGGGgGCGGccaUCUUCgaGAUCAa -3' miRNA: 3'- -CCGCcGCCUgUGCU---AGAAGgaCUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 188671 | 0.66 | 0.961905 |
Target: 5'- cGCGGCGGGagacgACGGUCgUCa-GGCCGa -3' miRNA: 3'- cCGCCGCCUg----UGCUAGaAGgaCUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 151562 | 0.66 | 0.961905 |
Target: 5'- cGCGGCGcggaGACAUcAUCaUCCUcGACCGu -3' miRNA: 3'- cCGCCGC----CUGUGcUAGaAGGA-CUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 38336 | 0.66 | 0.961905 |
Target: 5'- gGGUGGUGGGCugGGUCaaaugUUCgGGCg- -3' miRNA: 3'- -CCGCCGCCUGugCUAGa----AGGaCUGgu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 134036 | 0.66 | 0.961905 |
Target: 5'- uGGCGGCGGAggcUGCGAUaugaggaaCUUGugCAa -3' miRNA: 3'- -CCGCCGCCU---GUGCUAgaa-----GGACugGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 165386 | 0.66 | 0.961905 |
Target: 5'- -aCGGCGGACgcGCGGUCga--UGGCCu -3' miRNA: 3'- ccGCCGCCUG--UGCUAGaaggACUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 211398 | 0.66 | 0.958815 |
Target: 5'- aGGUGGCGGAgGCGGgggaaacgugggCCUGGgCGg -3' miRNA: 3'- -CCGCCGCCUgUGCUagaa--------GGACUgGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 62865 | 0.66 | 0.958462 |
Target: 5'- cGGCaGCGguGugGCGGUCUg-CUGGCCu -3' miRNA: 3'- -CCGcCGC--CugUGCUAGAagGACUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 138301 | 0.66 | 0.958462 |
Target: 5'- aGGCcGUGGACGCGGc---CCUGAUCGc -3' miRNA: 3'- -CCGcCGCCUGUGCUagaaGGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 5705 | 0.66 | 0.954811 |
Target: 5'- cGUGGCGGGacuCGGga-UCCUGGCCc -3' miRNA: 3'- cCGCCGCCUgu-GCUagaAGGACUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 138557 | 0.66 | 0.954811 |
Target: 5'- cGGCGGCGGACugacggcgACGGUgCcgUCCgcuCCGg -3' miRNA: 3'- -CCGCCGCCUG--------UGCUA-Ga-AGGacuGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 67679 | 0.66 | 0.954434 |
Target: 5'- cGGCGGCGGcgGCGGgcccuccaucucuUCUUCCgccGCCu -3' miRNA: 3'- -CCGCCGCCugUGCU-------------AGAAGGac-UGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 185311 | 0.66 | 0.950948 |
Target: 5'- -aCGuGCGGACaucGCGAacgaccgcagUCUUCCUGAUCu -3' miRNA: 3'- ccGC-CGCCUG---UGCU----------AGAAGGACUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 74603 | 0.66 | 0.950948 |
Target: 5'- cGGUGGCGGugGCGGcCgagUUCCcgGAaCCGc -3' miRNA: 3'- -CCGCCGCCugUGCUaG---AAGGa-CU-GGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 167354 | 0.66 | 0.950948 |
Target: 5'- cGGCGGCaGACAgGGUCgcCgCUG-CCGu -3' miRNA: 3'- -CCGCCGcCUGUgCUAGaaG-GACuGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 32972 | 0.66 | 0.950948 |
Target: 5'- cGCGGCGGAgCAUGA-CggaggCCUcgcgGACCAg -3' miRNA: 3'- cCGCCGCCU-GUGCUaGaa---GGA----CUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 132024 | 0.66 | 0.950948 |
Target: 5'- cGGCGGUGGugaccCACGA-CgaaCUGAUCAa -3' miRNA: 3'- -CCGCCGCCu----GUGCUaGaagGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 208304 | 0.66 | 0.950948 |
Target: 5'- aGCGGCa---GCGAaacCUUCCUGACCu -3' miRNA: 3'- cCGCCGccugUGCUa--GAAGGACUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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