miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16199 3' -56.2 NC_004065.1 + 106269 0.66 0.946871
Target:  5'- cGGCGcGCGGcgcaccgagguGCugGAcucggaggccaUCUcgaUCCUGACCu -3'
miRNA:   3'- -CCGC-CGCC-----------UGugCU-----------AGA---AGGACUGGu -5'
16199 3' -56.2 NC_004065.1 + 138301 0.66 0.958462
Target:  5'- aGGCcGUGGACGCGGc---CCUGAUCGc -3'
miRNA:   3'- -CCGcCGCCUGUGCUagaaGGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 62865 0.66 0.958462
Target:  5'- cGGCaGCGguGugGCGGUCUg-CUGGCCu -3'
miRNA:   3'- -CCGcCGC--CugUGCUAGAagGACUGGu -5'
16199 3' -56.2 NC_004065.1 + 175733 0.66 0.946871
Target:  5'- aGGUGGCGGAgACGAUUagaCUugaggaggaacGACCGg -3'
miRNA:   3'- -CCGCCGCCUgUGCUAGaagGA-----------CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 134036 0.66 0.961905
Target:  5'- uGGCGGCGGAggcUGCGAUaugaggaaCUUGugCAa -3'
miRNA:   3'- -CCGCCGCCU---GUGCUAgaa-----GGACugGU- -5'
16199 3' -56.2 NC_004065.1 + 142790 0.66 0.965145
Target:  5'- uGGCGcCGGGgGCGGccaUCUUCgaGAUCAa -3'
miRNA:   3'- -CCGCcGCCUgUGCU---AGAAGgaCUGGU- -5'
16199 3' -56.2 NC_004065.1 + 5705 0.66 0.954811
Target:  5'- cGUGGCGGGacuCGGga-UCCUGGCCc -3'
miRNA:   3'- cCGCCGCCUgu-GCUagaAGGACUGGu -5'
16199 3' -56.2 NC_004065.1 + 211398 0.66 0.958815
Target:  5'- aGGUGGCGGAgGCGGgggaaacgugggCCUGGgCGg -3'
miRNA:   3'- -CCGCCGCCUgUGCUagaa--------GGACUgGU- -5'
16199 3' -56.2 NC_004065.1 + 132024 0.66 0.950948
Target:  5'- cGGCGGUGGugaccCACGA-CgaaCUGAUCAa -3'
miRNA:   3'- -CCGCCGCCu----GUGCUaGaagGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 138557 0.66 0.954811
Target:  5'- cGGCGGCGGACugacggcgACGGUgCcgUCCgcuCCGg -3'
miRNA:   3'- -CCGCCGCCUG--------UGCUA-Ga-AGGacuGGU- -5'
16199 3' -56.2 NC_004065.1 + 67679 0.66 0.954434
Target:  5'- cGGCGGCGGcgGCGGgcccuccaucucuUCUUCCgccGCCu -3'
miRNA:   3'- -CCGCCGCCugUGCU-------------AGAAGGac-UGGu -5'
16199 3' -56.2 NC_004065.1 + 185311 0.66 0.950948
Target:  5'- -aCGuGCGGACaucGCGAacgaccgcagUCUUCCUGAUCu -3'
miRNA:   3'- ccGC-CGCCUG---UGCU----------AGAAGGACUGGu -5'
16199 3' -56.2 NC_004065.1 + 151562 0.66 0.961905
Target:  5'- cGCGGCGcggaGACAUcAUCaUCCUcGACCGu -3'
miRNA:   3'- cCGCCGC----CUGUGcUAGaAGGA-CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 167354 0.66 0.950948
Target:  5'- cGGCGGCaGACAgGGUCgcCgCUG-CCGu -3'
miRNA:   3'- -CCGCCGcCUGUgCUAGaaG-GACuGGU- -5'
16199 3' -56.2 NC_004065.1 + 208304 0.66 0.950948
Target:  5'- aGCGGCa---GCGAaacCUUCCUGACCu -3'
miRNA:   3'- cCGCCGccugUGCUa--GAAGGACUGGu -5'
16199 3' -56.2 NC_004065.1 + 162207 0.66 0.949343
Target:  5'- uGCGGCGG-CACGuccggcgcccgucUCUUCUUGcCCGa -3'
miRNA:   3'- cCGCCGCCuGUGCu------------AGAAGGACuGGU- -5'
16199 3' -56.2 NC_004065.1 + 32972 0.66 0.950948
Target:  5'- cGCGGCGGAgCAUGA-CggaggCCUcgcgGACCAg -3'
miRNA:   3'- cCGCCGCCU-GUGCUaGaa---GGA----CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 74603 0.66 0.950948
Target:  5'- cGGUGGCGGugGCGGcCgagUUCCcgGAaCCGc -3'
miRNA:   3'- -CCGCCGCCugUGCUaG---AAGGa-CU-GGU- -5'
16199 3' -56.2 NC_004065.1 + 38336 0.66 0.961905
Target:  5'- gGGUGGUGGGCugGGUCaaaugUUCgGGCg- -3'
miRNA:   3'- -CCGCCGCCUGugCUAGa----AGGaCUGgu -5'
16199 3' -56.2 NC_004065.1 + 71686 0.66 0.946871
Target:  5'- cGGCGGCGGcaACGgGAgcggCgcgUCCUcucgacagaaaGACCAg -3'
miRNA:   3'- -CCGCCGCC--UGUgCUa---Ga--AGGA-----------CUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.