Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16199 | 3' | -56.2 | NC_004065.1 | + | 130175 | 0.7 | 0.803321 |
Target: 5'- cGGCGGCgaucgGGGCGCaGAcgCUgaaacgCCUGGCCGg -3' miRNA: 3'- -CCGCCG-----CCUGUG-CUa-GAa-----GGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 28995 | 0.7 | 0.811832 |
Target: 5'- cGGCGGCGGugGCGAggcgccgcgcgcacgCggCCUcgagucaGACCGg -3' miRNA: 3'- -CCGCCGCCugUGCUa--------------GaaGGA-------CUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 224195 | 0.7 | 0.794666 |
Target: 5'- cGCGGCGGuuACGAUUUUCCgucGAUa- -3' miRNA: 3'- cCGCCGCCugUGCUAGAAGGa--CUGgu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 136687 | 0.7 | 0.828392 |
Target: 5'- cGGCGGCGGGCcggcuCGAgCUUUUauccgccacgaUGACCAu -3' miRNA: 3'- -CCGCCGCCUGu----GCUaGAAGG-----------ACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 114476 | 0.7 | 0.811832 |
Target: 5'- cGCGGCGGugGCGGUaCUUUC-GAUCc -3' miRNA: 3'- cCGCCGCCugUGCUA-GAAGGaCUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 145990 | 0.7 | 0.820192 |
Target: 5'- -aUGGCGGACGCcGUCUcgaUCgaGACCAg -3' miRNA: 3'- ccGCCGCCUGUGcUAGA---AGgaCUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 75669 | 0.7 | 0.803321 |
Target: 5'- cGGCgaGGCGGcCGCGggCUgauUCUUGGCCGc -3' miRNA: 3'- -CCG--CCGCCuGUGCuaGA---AGGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 6509 | 0.7 | 0.803321 |
Target: 5'- cGCGGCcGGCACuaGAUCc-CCUGACCGg -3' miRNA: 3'- cCGCCGcCUGUG--CUAGaaGGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 114834 | 0.7 | 0.836426 |
Target: 5'- cGCGGCGGcCACGGcCggaUCCagGGCCAu -3' miRNA: 3'- cCGCCGCCuGUGCUaGa--AGGa-CUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 153356 | 0.7 | 0.836426 |
Target: 5'- cGGCGGCGccGACGCGAUCcgUUUCgaGCCGa -3' miRNA: 3'- -CCGCCGC--CUGUGCUAG--AAGGacUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 211905 | 0.7 | 0.839591 |
Target: 5'- cGCGGCGGGCcCGGagguUCUUCCgcgacagagaugccGGCCAc -3' miRNA: 3'- cCGCCGCCUGuGCU----AGAAGGa-------------CUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 63561 | 0.7 | 0.794666 |
Target: 5'- uGGCGGCGGAgACG---UUCUcGGCCAc -3' miRNA: 3'- -CCGCCGCCUgUGCuagAAGGaCUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 172270 | 0.69 | 0.844287 |
Target: 5'- cGGCGGCGGcgACgACGAUCUcucUCCUccCCu -3' miRNA: 3'- -CCGCCGCC--UG-UGCUAGA---AGGAcuGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 37873 | 0.69 | 0.844287 |
Target: 5'- cGGCGGUGaucGGCACGAUgUUCCgcACCu -3' miRNA: 3'- -CCGCCGC---CUGUGCUAgAAGGacUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 109199 | 0.69 | 0.844287 |
Target: 5'- cGGCGGCGGcGCcuCGGccUCUUCCUGcUCGg -3' miRNA: 3'- -CCGCCGCC-UGu-GCU--AGAAGGACuGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 155367 | 0.69 | 0.844287 |
Target: 5'- -aCGGCGGACGCGccgCggUCCgGACCu -3' miRNA: 3'- ccGCCGCCUGUGCua-Ga-AGGaCUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 29715 | 0.69 | 0.847381 |
Target: 5'- aGCGGCGGACGCcgcccaggacgaugaGAUCcUCCgGACa- -3' miRNA: 3'- cCGCCGCCUGUG---------------CUAGaAGGaCUGgu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 8325 | 0.69 | 0.851969 |
Target: 5'- cGGUaGCGGugACGAUCUUuauagugacUCUGAUCGc -3' miRNA: 3'- -CCGcCGCCugUGCUAGAA---------GGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 70959 | 0.69 | 0.844287 |
Target: 5'- cGCGGCGGuCGguccaGAUCgcgaUUCUGACCAc -3' miRNA: 3'- cCGCCGCCuGUg----CUAGa---AGGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 95923 | 0.69 | 0.86677 |
Target: 5'- gGGC-GCGGACGCGAUCUga--GGCUAg -3' miRNA: 3'- -CCGcCGCCUGUGCUAGAaggaCUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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