Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16199 | 3' | -56.2 | NC_004065.1 | + | 194858 | 1.11 | 0.003476 |
Target: 5'- cGGCGGCGGACACGAUCUUCCUGACCAg -3' miRNA: 3'- -CCGCCGCCUGUGCUAGAAGGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 68512 | 0.79 | 0.361346 |
Target: 5'- aGGCGGCGGACGC-AUCUcCCggaGGCCGa -3' miRNA: 3'- -CCGCCGCCUGUGcUAGAaGGa--CUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 94738 | 0.79 | 0.369089 |
Target: 5'- cGGCGGCGGAgACGcgUUUcagcgcgaaCCUGGCCAg -3' miRNA: 3'- -CCGCCGCCUgUGCuaGAA---------GGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 99403 | 0.76 | 0.488631 |
Target: 5'- uGGCGGCGGGCGCGuugCUggagaUCUUGACa- -3' miRNA: 3'- -CCGCCGCCUGUGCua-GA-----AGGACUGgu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 28745 | 0.76 | 0.516595 |
Target: 5'- cGGUGGCGGACGC---CUUCCUGcGCCu -3' miRNA: 3'- -CCGCCGCCUGUGcuaGAAGGAC-UGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 71047 | 0.74 | 0.633267 |
Target: 5'- cGGCGGgGaGGCACGAUacaagaucCUgagcgacgcgaUCCUGACCAa -3' miRNA: 3'- -CCGCCgC-CUGUGCUA--------GA-----------AGGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 79550 | 0.73 | 0.653003 |
Target: 5'- aGGCGGUcGAUGCGGcgcagcggcgCUUCCUGGCCGa -3' miRNA: 3'- -CCGCCGcCUGUGCUa---------GAAGGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 176341 | 0.73 | 0.653003 |
Target: 5'- gGGCGGC-GACACGAUCaUCggaUGACUAu -3' miRNA: 3'- -CCGCCGcCUGUGCUAGaAGg--ACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 75596 | 0.73 | 0.672677 |
Target: 5'- cGGCGGgGGgaggccGCugGGUCUggUCCUGAUCc -3' miRNA: 3'- -CCGCCgCC------UGugCUAGA--AGGACUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 144374 | 0.72 | 0.692228 |
Target: 5'- cGGCgcuGGCGGugACGAUCUggugccUCCUuGCCu -3' miRNA: 3'- -CCG---CCGCCugUGCUAGA------AGGAcUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 186118 | 0.72 | 0.692228 |
Target: 5'- uGGCGGCGcaucGACGCGAUC-UCC-GACUc -3' miRNA: 3'- -CCGCCGC----CUGUGCUAGaAGGaCUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 90993 | 0.72 | 0.701938 |
Target: 5'- uGGCGGaCGGACugcaGCG-UCUUCUUGACgCGg -3' miRNA: 3'- -CCGCC-GCCUG----UGCuAGAAGGACUG-GU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 42238 | 0.72 | 0.711593 |
Target: 5'- cGGCGGgGGGCGCGAUagggggugUCUGAUCu -3' miRNA: 3'- -CCGCCgCCUGUGCUAgaa-----GGACUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 188256 | 0.72 | 0.721185 |
Target: 5'- --aGGCGGACaggucgGCGGUCaUCUUGGCCAc -3' miRNA: 3'- ccgCCGCCUG------UGCUAGaAGGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 143268 | 0.72 | 0.721185 |
Target: 5'- cGCGGCGGGgGCGGcagCUUCaagGGCCGa -3' miRNA: 3'- cCGCCGCCUgUGCUa--GAAGga-CUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 129896 | 0.72 | 0.721185 |
Target: 5'- uGCGGCGGACccUGAUCggggCCUGGCg- -3' miRNA: 3'- cCGCCGCCUGu-GCUAGaa--GGACUGgu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 40640 | 0.72 | 0.7439 |
Target: 5'- cGGCGaCGGugacgccgaacgGCACGAUCUUgcuucacgacaacuaCCUGACCAc -3' miRNA: 3'- -CCGCcGCC------------UGUGCUAGAA---------------GGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 118440 | 0.71 | 0.785874 |
Target: 5'- cGGCGGCGucCuCG-UCUUCCUcGGCCGg -3' miRNA: 3'- -CCGCCGCcuGuGCuAGAAGGA-CUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 8761 | 0.7 | 0.794666 |
Target: 5'- uGGCGGCGG-CAgGGUUcauaUCCUGGCa- -3' miRNA: 3'- -CCGCCGCCuGUgCUAGa---AGGACUGgu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 63561 | 0.7 | 0.794666 |
Target: 5'- uGGCGGCGGAgACG---UUCUcGGCCAc -3' miRNA: 3'- -CCGCCGCCUgUGCuagAAGGaCUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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