miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16199 3' -56.2 NC_004065.1 + 63561 0.7 0.794666
Target:  5'- uGGCGGCGGAgACG---UUCUcGGCCAc -3'
miRNA:   3'- -CCGCCGCCUgUGCuagAAGGaCUGGU- -5'
16199 3' -56.2 NC_004065.1 + 75669 0.7 0.803321
Target:  5'- cGGCgaGGCGGcCGCGggCUgauUCUUGGCCGc -3'
miRNA:   3'- -CCG--CCGCCuGUGCuaGA---AGGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 6509 0.7 0.803321
Target:  5'- cGCGGCcGGCACuaGAUCc-CCUGACCGg -3'
miRNA:   3'- cCGCCGcCUGUG--CUAGaaGGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 130175 0.7 0.803321
Target:  5'- cGGCGGCgaucgGGGCGCaGAcgCUgaaacgCCUGGCCGg -3'
miRNA:   3'- -CCGCCG-----CCUGUG-CUa-GAa-----GGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 28995 0.7 0.811832
Target:  5'- cGGCGGCGGugGCGAggcgccgcgcgcacgCggCCUcgagucaGACCGg -3'
miRNA:   3'- -CCGCCGCCugUGCUa--------------GaaGGA-------CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 131869 0.7 0.811832
Target:  5'- aGGCGGCGGugGCGGcggcgacuaUCaccgCCaGACCu -3'
miRNA:   3'- -CCGCCGCCugUGCU---------AGaa--GGaCUGGu -5'
16199 3' -56.2 NC_004065.1 + 114476 0.7 0.811832
Target:  5'- cGCGGCGGugGCGGUaCUUUC-GAUCc -3'
miRNA:   3'- cCGCCGCCugUGCUA-GAAGGaCUGGu -5'
16199 3' -56.2 NC_004065.1 + 145990 0.7 0.820192
Target:  5'- -aUGGCGGACGCcGUCUcgaUCgaGACCAg -3'
miRNA:   3'- ccGCCGCCUGUGcUAGA---AGgaCUGGU- -5'
16199 3' -56.2 NC_004065.1 + 136687 0.7 0.828392
Target:  5'- cGGCGGCGGGCcggcuCGAgCUUUUauccgccacgaUGACCAu -3'
miRNA:   3'- -CCGCCGCCUGu----GCUaGAAGG-----------ACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 153356 0.7 0.836426
Target:  5'- cGGCGGCGccGACGCGAUCcgUUUCgaGCCGa -3'
miRNA:   3'- -CCGCCGC--CUGUGCUAG--AAGGacUGGU- -5'
16199 3' -56.2 NC_004065.1 + 114834 0.7 0.836426
Target:  5'- cGCGGCGGcCACGGcCggaUCCagGGCCAu -3'
miRNA:   3'- cCGCCGCCuGUGCUaGa--AGGa-CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 211905 0.7 0.839591
Target:  5'- cGCGGCGGGCcCGGagguUCUUCCgcgacagagaugccGGCCAc -3'
miRNA:   3'- cCGCCGCCUGuGCU----AGAAGGa-------------CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 37873 0.69 0.844287
Target:  5'- cGGCGGUGaucGGCACGAUgUUCCgcACCu -3'
miRNA:   3'- -CCGCCGC---CUGUGCUAgAAGGacUGGu -5'
16199 3' -56.2 NC_004065.1 + 109199 0.69 0.844287
Target:  5'- cGGCGGCGGcGCcuCGGccUCUUCCUGcUCGg -3'
miRNA:   3'- -CCGCCGCC-UGu-GCU--AGAAGGACuGGU- -5'
16199 3' -56.2 NC_004065.1 + 155367 0.69 0.844287
Target:  5'- -aCGGCGGACGCGccgCggUCCgGACCu -3'
miRNA:   3'- ccGCCGCCUGUGCua-Ga-AGGaCUGGu -5'
16199 3' -56.2 NC_004065.1 + 70959 0.69 0.844287
Target:  5'- cGCGGCGGuCGguccaGAUCgcgaUUCUGACCAc -3'
miRNA:   3'- cCGCCGCCuGUg----CUAGa---AGGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 172270 0.69 0.844287
Target:  5'- cGGCGGCGGcgACgACGAUCUcucUCCUccCCu -3'
miRNA:   3'- -CCGCCGCC--UG-UGCUAGA---AGGAcuGGu -5'
16199 3' -56.2 NC_004065.1 + 29715 0.69 0.847381
Target:  5'- aGCGGCGGACGCcgcccaggacgaugaGAUCcUCCgGACa- -3'
miRNA:   3'- cCGCCGCCUGUG---------------CUAGaAGGaCUGgu -5'
16199 3' -56.2 NC_004065.1 + 8325 0.69 0.851969
Target:  5'- cGGUaGCGGugACGAUCUUuauagugacUCUGAUCGc -3'
miRNA:   3'- -CCGcCGCCugUGCUAGAA---------GGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 103136 0.69 0.859465
Target:  5'- cGGCGGCucACGCGAUCaugUUCCacGACCu -3'
miRNA:   3'- -CCGCCGccUGUGCUAG---AAGGa-CUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.