Results 41 - 60 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16199 | 3' | -56.2 | NC_004065.1 | + | 95923 | 0.69 | 0.86677 |
Target: 5'- gGGC-GCGGACGCGAUCUga--GGCUAg -3' miRNA: 3'- -CCGcCGCCUGUGCUAGAaggaCUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 65186 | 0.69 | 0.873177 |
Target: 5'- aGCGGCGGccauCGCGGUUUccUCCUcggaaacGGCCAg -3' miRNA: 3'- cCGCCGCCu---GUGCUAGA--AGGA-------CUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 202505 | 0.69 | 0.873177 |
Target: 5'- aGUGGUGGAggcacgcCGCGAugaaUCUggcgUCCUGACCGc -3' miRNA: 3'- cCGCCGCCU-------GUGCU----AGA----AGGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 132337 | 0.69 | 0.873879 |
Target: 5'- cGGCGGCGGcagcgacCGCGAguaUCacaUCCUGcGCCAg -3' miRNA: 3'- -CCGCCGCCu------GUGCU---AGa--AGGAC-UGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 142479 | 0.69 | 0.876666 |
Target: 5'- gGGCGGUGGACGCGAgccaggggguggcggUCUgucgacggcUCUUGuCCc -3' miRNA: 3'- -CCGCCGCCUGUGCU---------------AGA---------AGGACuGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 152799 | 0.69 | 0.880787 |
Target: 5'- -uCGGUGGcCACGAUCagCgUGGCCAu -3' miRNA: 3'- ccGCCGCCuGUGCUAGaaGgACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 4689 | 0.69 | 0.880787 |
Target: 5'- cGGCGGCGGACacuaACGAUCcgggaUGGCg- -3' miRNA: 3'- -CCGCCGCCUG----UGCUAGaagg-ACUGgu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 189593 | 0.68 | 0.887488 |
Target: 5'- aGCGGUGGugACauUCUUCCUG-UCGg -3' miRNA: 3'- cCGCCGCCugUGcuAGAAGGACuGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 82141 | 0.68 | 0.887488 |
Target: 5'- cGGCGGCgcGGACGCuGUaccUCCUGGCgAg -3' miRNA: 3'- -CCGCCG--CCUGUGcUAga-AGGACUGgU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 146634 | 0.68 | 0.887488 |
Target: 5'- cGGUGGUGaacgccguCACGggCUUCCUGACgAa -3' miRNA: 3'- -CCGCCGCcu------GUGCuaGAAGGACUGgU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 61718 | 0.68 | 0.89398 |
Target: 5'- aGCGGCGGAUGCGAgccaugcgCUcCUUGGCgGg -3' miRNA: 3'- cCGCCGCCUGUGCUa-------GAaGGACUGgU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 48107 | 0.68 | 0.89398 |
Target: 5'- cGGCGGCGGugGCGGcggCgguggGACCu -3' miRNA: 3'- -CCGCCGCCugUGCUa--GaaggaCUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 54522 | 0.68 | 0.900259 |
Target: 5'- -uCGGCGGACGCGuUCUgucuaCUGACg- -3' miRNA: 3'- ccGCCGCCUGUGCuAGAag---GACUGgu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 115065 | 0.68 | 0.906321 |
Target: 5'- cGGCGcGCgcgaGGACGCGGccucggucggcUCUUC-UGACCAg -3' miRNA: 3'- -CCGC-CG----CCUGUGCU-----------AGAAGgACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 186494 | 0.68 | 0.912165 |
Target: 5'- cGGa-GCgGGACGcCGAucgacUCUUCCUGGCCGc -3' miRNA: 3'- -CCgcCG-CCUGU-GCU-----AGAAGGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 182345 | 0.68 | 0.912165 |
Target: 5'- aGGuCGGUGGACgACGAUuccgacgacgaCUgcgacaccagCCUGACCAc -3' miRNA: 3'- -CC-GCCGCCUG-UGCUA-----------GAa---------GGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 123629 | 0.68 | 0.912165 |
Target: 5'- cGUGGUGGACAggaaccugaUGAUCacggUCCUGgACCGc -3' miRNA: 3'- cCGCCGCCUGU---------GCUAGa---AGGAC-UGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 187662 | 0.68 | 0.912165 |
Target: 5'- cGGCGGgguccaCGGGCACGAg---CCUGAUg- -3' miRNA: 3'- -CCGCC------GCCUGUGCUagaaGGACUGgu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 223231 | 0.67 | 0.923191 |
Target: 5'- aGCGGC-GACGCGGUCUUCUgGAa-- -3' miRNA: 3'- cCGCCGcCUGUGCUAGAAGGaCUggu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 62658 | 0.67 | 0.923191 |
Target: 5'- uGGCGGCGGAgACGGcagCggcgacCCUGucuGCCGc -3' miRNA: 3'- -CCGCCGCCUgUGCUa--Gaa----GGAC---UGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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