Results 61 - 80 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16199 | 3' | -56.2 | NC_004065.1 | + | 4412 | 0.67 | 0.923191 |
Target: 5'- aGCGGUGGcCACGG-CgggCCUGACg- -3' miRNA: 3'- cCGCCGCCuGUGCUaGaa-GGACUGgu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 194825 | 0.67 | 0.928371 |
Target: 5'- uGGCGGUGGccgcCACGuUCU-CCaGGCCGa -3' miRNA: 3'- -CCGCCGCCu---GUGCuAGAaGGaCUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 128457 | 0.67 | 0.928371 |
Target: 5'- aGGCGuccGCGGGCGCGAUCaggcuaccaCUG-CCAg -3' miRNA: 3'- -CCGC---CGCCUGUGCUAGaag------GACuGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 168990 | 0.67 | 0.932842 |
Target: 5'- cGCGGCGGACcucggagGCGA-CaUCgUGGCCu -3' miRNA: 3'- cCGCCGCCUG-------UGCUaGaAGgACUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 175246 | 0.67 | 0.933328 |
Target: 5'- cGCGGUugggaGGACAUGAcuUCUUCCgaACCGg -3' miRNA: 3'- cCGCCG-----CCUGUGCU--AGAAGGacUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 109407 | 0.67 | 0.933328 |
Target: 5'- cGCGGCGGACGCcacgagcuacucGAUCcUCgUGcACCc -3' miRNA: 3'- cCGCCGCCUGUG------------CUAGaAGgAC-UGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 29603 | 0.67 | 0.933328 |
Target: 5'- cGCGGUccugcaGGACuucGCGGacaUCUUCCUGGCgCAg -3' miRNA: 3'- cCGCCG------CCUG---UGCU---AGAAGGACUG-GU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 120556 | 0.67 | 0.933328 |
Target: 5'- cGGCGGCGGucgGCGCGAgCgggCggGACCu -3' miRNA: 3'- -CCGCCGCC---UGUGCUaGaa-GgaCUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 16610 | 0.67 | 0.938063 |
Target: 5'- cGCuGCGGACGCGAUCU-CUUcGGCg- -3' miRNA: 3'- cCGcCGCCUGUGCUAGAaGGA-CUGgu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 56514 | 0.67 | 0.938063 |
Target: 5'- cGGCGaCGGACGCGAgauuUCUUCagagUGGCg- -3' miRNA: 3'- -CCGCcGCCUGUGCU----AGAAGg---ACUGgu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 205435 | 0.67 | 0.942576 |
Target: 5'- cGGCGGCGGugGCGG-CgacgacaCgcgcgGACCGc -3' miRNA: 3'- -CCGCCGCCugUGCUaGaag----Ga----CUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 160992 | 0.67 | 0.942576 |
Target: 5'- cGGCGGCGGGCugcugCUgcuaUCCgUGAUCAu -3' miRNA: 3'- -CCGCCGCCUGugcuaGA----AGG-ACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 106269 | 0.66 | 0.946871 |
Target: 5'- cGGCGcGCGGcgcaccgagguGCugGAcucggaggccaUCUcgaUCCUGACCu -3' miRNA: 3'- -CCGC-CGCC-----------UGugCU-----------AGA---AGGACUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 175733 | 0.66 | 0.946871 |
Target: 5'- aGGUGGCGGAgACGAUUagaCUugaggaggaacGACCGg -3' miRNA: 3'- -CCGCCGCCUgUGCUAGaagGA-----------CUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 71686 | 0.66 | 0.946871 |
Target: 5'- cGGCGGCGGcaACGgGAgcggCgcgUCCUcucgacagaaaGACCAg -3' miRNA: 3'- -CCGCCGCC--UGUgCUa---Ga--AGGA-----------CUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 162207 | 0.66 | 0.949343 |
Target: 5'- uGCGGCGG-CACGuccggcgcccgucUCUUCUUGcCCGa -3' miRNA: 3'- cCGCCGCCuGUGCu------------AGAAGGACuGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 132024 | 0.66 | 0.950948 |
Target: 5'- cGGCGGUGGugaccCACGA-CgaaCUGAUCAa -3' miRNA: 3'- -CCGCCGCCu----GUGCUaGaagGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 74603 | 0.66 | 0.950948 |
Target: 5'- cGGUGGCGGugGCGGcCgagUUCCcgGAaCCGc -3' miRNA: 3'- -CCGCCGCCugUGCUaG---AAGGa-CU-GGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 32972 | 0.66 | 0.950948 |
Target: 5'- cGCGGCGGAgCAUGA-CggaggCCUcgcgGACCAg -3' miRNA: 3'- cCGCCGCCU-GUGCUaGaa---GGA----CUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 185311 | 0.66 | 0.950948 |
Target: 5'- -aCGuGCGGACaucGCGAacgaccgcagUCUUCCUGAUCu -3' miRNA: 3'- ccGC-CGCCUG---UGCU----------AGAAGGACUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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