miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16199 3' -56.2 NC_004065.1 + 162207 0.66 0.949343
Target:  5'- uGCGGCGG-CACGuccggcgcccgucUCUUCUUGcCCGa -3'
miRNA:   3'- cCGCCGCCuGUGCu------------AGAAGGACuGGU- -5'
16199 3' -56.2 NC_004065.1 + 71686 0.66 0.946871
Target:  5'- cGGCGGCGGcaACGgGAgcggCgcgUCCUcucgacagaaaGACCAg -3'
miRNA:   3'- -CCGCCGCC--UGUgCUa---Ga--AGGA-----------CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 106269 0.66 0.946871
Target:  5'- cGGCGcGCGGcgcaccgagguGCugGAcucggaggccaUCUcgaUCCUGACCu -3'
miRNA:   3'- -CCGC-CGCC-----------UGugCU-----------AGA---AGGACUGGu -5'
16199 3' -56.2 NC_004065.1 + 175733 0.66 0.946871
Target:  5'- aGGUGGCGGAgACGAUUagaCUugaggaggaacGACCGg -3'
miRNA:   3'- -CCGCCGCCUgUGCUAGaagGA-----------CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 160992 0.67 0.942576
Target:  5'- cGGCGGCGGGCugcugCUgcuaUCCgUGAUCAu -3'
miRNA:   3'- -CCGCCGCCUGugcuaGA----AGG-ACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 205435 0.67 0.942576
Target:  5'- cGGCGGCGGugGCGG-CgacgacaCgcgcgGACCGc -3'
miRNA:   3'- -CCGCCGCCugUGCUaGaag----Ga----CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 56514 0.67 0.938063
Target:  5'- cGGCGaCGGACGCGAgauuUCUUCagagUGGCg- -3'
miRNA:   3'- -CCGCcGCCUGUGCU----AGAAGg---ACUGgu -5'
16199 3' -56.2 NC_004065.1 + 16610 0.67 0.938063
Target:  5'- cGCuGCGGACGCGAUCU-CUUcGGCg- -3'
miRNA:   3'- cCGcCGCCUGUGCUAGAaGGA-CUGgu -5'
16199 3' -56.2 NC_004065.1 + 29603 0.67 0.933328
Target:  5'- cGCGGUccugcaGGACuucGCGGacaUCUUCCUGGCgCAg -3'
miRNA:   3'- cCGCCG------CCUG---UGCU---AGAAGGACUG-GU- -5'
16199 3' -56.2 NC_004065.1 + 109407 0.67 0.933328
Target:  5'- cGCGGCGGACGCcacgagcuacucGAUCcUCgUGcACCc -3'
miRNA:   3'- cCGCCGCCUGUG------------CUAGaAGgAC-UGGu -5'
16199 3' -56.2 NC_004065.1 + 120556 0.67 0.933328
Target:  5'- cGGCGGCGGucgGCGCGAgCgggCggGACCu -3'
miRNA:   3'- -CCGCCGCC---UGUGCUaGaa-GgaCUGGu -5'
16199 3' -56.2 NC_004065.1 + 175246 0.67 0.933328
Target:  5'- cGCGGUugggaGGACAUGAcuUCUUCCgaACCGg -3'
miRNA:   3'- cCGCCG-----CCUGUGCU--AGAAGGacUGGU- -5'
16199 3' -56.2 NC_004065.1 + 168990 0.67 0.932842
Target:  5'- cGCGGCGGACcucggagGCGA-CaUCgUGGCCu -3'
miRNA:   3'- cCGCCGCCUG-------UGCUaGaAGgACUGGu -5'
16199 3' -56.2 NC_004065.1 + 128457 0.67 0.928371
Target:  5'- aGGCGuccGCGGGCGCGAUCaggcuaccaCUG-CCAg -3'
miRNA:   3'- -CCGC---CGCCUGUGCUAGaag------GACuGGU- -5'
16199 3' -56.2 NC_004065.1 + 194825 0.67 0.928371
Target:  5'- uGGCGGUGGccgcCACGuUCU-CCaGGCCGa -3'
miRNA:   3'- -CCGCCGCCu---GUGCuAGAaGGaCUGGU- -5'
16199 3' -56.2 NC_004065.1 + 4412 0.67 0.923191
Target:  5'- aGCGGUGGcCACGG-CgggCCUGACg- -3'
miRNA:   3'- cCGCCGCCuGUGCUaGaa-GGACUGgu -5'
16199 3' -56.2 NC_004065.1 + 62658 0.67 0.923191
Target:  5'- uGGCGGCGGAgACGGcagCggcgacCCUGucuGCCGc -3'
miRNA:   3'- -CCGCCGCCUgUGCUa--Gaa----GGAC---UGGU- -5'
16199 3' -56.2 NC_004065.1 + 223231 0.67 0.923191
Target:  5'- aGCGGC-GACGCGGUCUUCUgGAa-- -3'
miRNA:   3'- cCGCCGcCUGUGCUAGAAGGaCUggu -5'
16199 3' -56.2 NC_004065.1 + 187662 0.68 0.912165
Target:  5'- cGGCGGgguccaCGGGCACGAg---CCUGAUg- -3'
miRNA:   3'- -CCGCC------GCCUGUGCUagaaGGACUGgu -5'
16199 3' -56.2 NC_004065.1 + 123629 0.68 0.912165
Target:  5'- cGUGGUGGACAggaaccugaUGAUCacggUCCUGgACCGc -3'
miRNA:   3'- cCGCCGCCUGU---------GCUAGa---AGGAC-UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.