miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16199 3' -56.2 NC_004065.1 + 62658 0.67 0.923191
Target:  5'- uGGCGGCGGAgACGGcagCggcgacCCUGucuGCCGc -3'
miRNA:   3'- -CCGCCGCCUgUGCUa--Gaa----GGAC---UGGU- -5'
16199 3' -56.2 NC_004065.1 + 62865 0.66 0.958462
Target:  5'- cGGCaGCGguGugGCGGUCUg-CUGGCCu -3'
miRNA:   3'- -CCGcCGC--CugUGCUAGAagGACUGGu -5'
16199 3' -56.2 NC_004065.1 + 63561 0.7 0.794666
Target:  5'- uGGCGGCGGAgACG---UUCUcGGCCAc -3'
miRNA:   3'- -CCGCCGCCUgUGCuagAAGGaCUGGU- -5'
16199 3' -56.2 NC_004065.1 + 65186 0.69 0.873177
Target:  5'- aGCGGCGGccauCGCGGUUUccUCCUcggaaacGGCCAg -3'
miRNA:   3'- cCGCCGCCu---GUGCUAGA--AGGA-------CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 67679 0.66 0.954434
Target:  5'- cGGCGGCGGcgGCGGgcccuccaucucuUCUUCCgccGCCu -3'
miRNA:   3'- -CCGCCGCCugUGCU-------------AGAAGGac-UGGu -5'
16199 3' -56.2 NC_004065.1 + 68512 0.79 0.361346
Target:  5'- aGGCGGCGGACGC-AUCUcCCggaGGCCGa -3'
miRNA:   3'- -CCGCCGCCUGUGcUAGAaGGa--CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 70959 0.69 0.844287
Target:  5'- cGCGGCGGuCGguccaGAUCgcgaUUCUGACCAc -3'
miRNA:   3'- cCGCCGCCuGUg----CUAGa---AGGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 71047 0.74 0.633267
Target:  5'- cGGCGGgGaGGCACGAUacaagaucCUgagcgacgcgaUCCUGACCAa -3'
miRNA:   3'- -CCGCCgC-CUGUGCUA--------GA-----------AGGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 71686 0.66 0.946871
Target:  5'- cGGCGGCGGcaACGgGAgcggCgcgUCCUcucgacagaaaGACCAg -3'
miRNA:   3'- -CCGCCGCC--UGUgCUa---Ga--AGGA-----------CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 74603 0.66 0.950948
Target:  5'- cGGUGGCGGugGCGGcCgagUUCCcgGAaCCGc -3'
miRNA:   3'- -CCGCCGCCugUGCUaG---AAGGa-CU-GGU- -5'
16199 3' -56.2 NC_004065.1 + 75596 0.73 0.672677
Target:  5'- cGGCGGgGGgaggccGCugGGUCUggUCCUGAUCc -3'
miRNA:   3'- -CCGCCgCC------UGugCUAGA--AGGACUGGu -5'
16199 3' -56.2 NC_004065.1 + 75669 0.7 0.803321
Target:  5'- cGGCgaGGCGGcCGCGggCUgauUCUUGGCCGc -3'
miRNA:   3'- -CCG--CCGCCuGUGCuaGA---AGGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 79550 0.73 0.653003
Target:  5'- aGGCGGUcGAUGCGGcgcagcggcgCUUCCUGGCCGa -3'
miRNA:   3'- -CCGCCGcCUGUGCUa---------GAAGGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 82141 0.68 0.887488
Target:  5'- cGGCGGCgcGGACGCuGUaccUCCUGGCgAg -3'
miRNA:   3'- -CCGCCG--CCUGUGcUAga-AGGACUGgU- -5'
16199 3' -56.2 NC_004065.1 + 90993 0.72 0.701938
Target:  5'- uGGCGGaCGGACugcaGCG-UCUUCUUGACgCGg -3'
miRNA:   3'- -CCGCC-GCCUG----UGCuAGAAGGACUG-GU- -5'
16199 3' -56.2 NC_004065.1 + 92172 0.66 0.965145
Target:  5'- cGGCGGCGaucGACGCGGUCaaguUUCa--GCCGu -3'
miRNA:   3'- -CCGCCGC---CUGUGCUAG----AAGgacUGGU- -5'
16199 3' -56.2 NC_004065.1 + 94738 0.79 0.369089
Target:  5'- cGGCGGCGGAgACGcgUUUcagcgcgaaCCUGGCCAg -3'
miRNA:   3'- -CCGCCGCCUgUGCuaGAA---------GGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 95923 0.69 0.86677
Target:  5'- gGGC-GCGGACGCGAUCUga--GGCUAg -3'
miRNA:   3'- -CCGcCGCCUGUGCUAGAaggaCUGGU- -5'
16199 3' -56.2 NC_004065.1 + 99403 0.76 0.488631
Target:  5'- uGGCGGCGGGCGCGuugCUggagaUCUUGACa- -3'
miRNA:   3'- -CCGCCGCCUGUGCua-GA-----AGGACUGgu -5'
16199 3' -56.2 NC_004065.1 + 103136 0.69 0.859465
Target:  5'- cGGCGGCucACGCGAUCaugUUCCacGACCu -3'
miRNA:   3'- -CCGCCGccUGUGCUAG---AAGGa-CUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.