miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16199 3' -56.2 NC_004065.1 + 106269 0.66 0.946871
Target:  5'- cGGCGcGCGGcgcaccgagguGCugGAcucggaggccaUCUcgaUCCUGACCu -3'
miRNA:   3'- -CCGC-CGCC-----------UGugCU-----------AGA---AGGACUGGu -5'
16199 3' -56.2 NC_004065.1 + 109199 0.69 0.844287
Target:  5'- cGGCGGCGGcGCcuCGGccUCUUCCUGcUCGg -3'
miRNA:   3'- -CCGCCGCC-UGu-GCU--AGAAGGACuGGU- -5'
16199 3' -56.2 NC_004065.1 + 109407 0.67 0.933328
Target:  5'- cGCGGCGGACGCcacgagcuacucGAUCcUCgUGcACCc -3'
miRNA:   3'- cCGCCGCCUGUG------------CUAGaAGgAC-UGGu -5'
16199 3' -56.2 NC_004065.1 + 114476 0.7 0.811832
Target:  5'- cGCGGCGGugGCGGUaCUUUC-GAUCc -3'
miRNA:   3'- cCGCCGCCugUGCUA-GAAGGaCUGGu -5'
16199 3' -56.2 NC_004065.1 + 114834 0.7 0.836426
Target:  5'- cGCGGCGGcCACGGcCggaUCCagGGCCAu -3'
miRNA:   3'- cCGCCGCCuGUGCUaGa--AGGa-CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 115065 0.68 0.906321
Target:  5'- cGGCGcGCgcgaGGACGCGGccucggucggcUCUUC-UGACCAg -3'
miRNA:   3'- -CCGC-CG----CCUGUGCU-----------AGAAGgACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 118440 0.71 0.785874
Target:  5'- cGGCGGCGucCuCG-UCUUCCUcGGCCGg -3'
miRNA:   3'- -CCGCCGCcuGuGCuAGAAGGA-CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 120556 0.67 0.933328
Target:  5'- cGGCGGCGGucgGCGCGAgCgggCggGACCu -3'
miRNA:   3'- -CCGCCGCC---UGUGCUaGaa-GgaCUGGu -5'
16199 3' -56.2 NC_004065.1 + 123629 0.68 0.912165
Target:  5'- cGUGGUGGACAggaaccugaUGAUCacggUCCUGgACCGc -3'
miRNA:   3'- cCGCCGCCUGU---------GCUAGa---AGGAC-UGGU- -5'
16199 3' -56.2 NC_004065.1 + 128457 0.67 0.928371
Target:  5'- aGGCGuccGCGGGCGCGAUCaggcuaccaCUG-CCAg -3'
miRNA:   3'- -CCGC---CGCCUGUGCUAGaag------GACuGGU- -5'
16199 3' -56.2 NC_004065.1 + 129896 0.72 0.721185
Target:  5'- uGCGGCGGACccUGAUCggggCCUGGCg- -3'
miRNA:   3'- cCGCCGCCUGu-GCUAGaa--GGACUGgu -5'
16199 3' -56.2 NC_004065.1 + 130175 0.7 0.803321
Target:  5'- cGGCGGCgaucgGGGCGCaGAcgCUgaaacgCCUGGCCGg -3'
miRNA:   3'- -CCGCCG-----CCUGUG-CUa-GAa-----GGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 131869 0.7 0.811832
Target:  5'- aGGCGGCGGugGCGGcggcgacuaUCaccgCCaGACCu -3'
miRNA:   3'- -CCGCCGCCugUGCU---------AGaa--GGaCUGGu -5'
16199 3' -56.2 NC_004065.1 + 132024 0.66 0.950948
Target:  5'- cGGCGGUGGugaccCACGA-CgaaCUGAUCAa -3'
miRNA:   3'- -CCGCCGCCu----GUGCUaGaagGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 132337 0.69 0.873879
Target:  5'- cGGCGGCGGcagcgacCGCGAguaUCacaUCCUGcGCCAg -3'
miRNA:   3'- -CCGCCGCCu------GUGCU---AGa--AGGAC-UGGU- -5'
16199 3' -56.2 NC_004065.1 + 134036 0.66 0.961905
Target:  5'- uGGCGGCGGAggcUGCGAUaugaggaaCUUGugCAa -3'
miRNA:   3'- -CCGCCGCCU---GUGCUAgaa-----GGACugGU- -5'
16199 3' -56.2 NC_004065.1 + 136687 0.7 0.828392
Target:  5'- cGGCGGCGGGCcggcuCGAgCUUUUauccgccacgaUGACCAu -3'
miRNA:   3'- -CCGCCGCCUGu----GCUaGAAGG-----------ACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 138247 0.66 0.965145
Target:  5'- -aUGGCGGACgACGAUCUcuccagCCUcGCCc -3'
miRNA:   3'- ccGCCGCCUG-UGCUAGAa-----GGAcUGGu -5'
16199 3' -56.2 NC_004065.1 + 138301 0.66 0.958462
Target:  5'- aGGCcGUGGACGCGGc---CCUGAUCGc -3'
miRNA:   3'- -CCGcCGCCUGUGCUagaaGGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 138557 0.66 0.954811
Target:  5'- cGGCGGCGGACugacggcgACGGUgCcgUCCgcuCCGg -3'
miRNA:   3'- -CCGCCGCCUG--------UGCUA-Ga-AGGacuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.