miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16199 3' -56.2 NC_004065.1 + 224195 0.7 0.794666
Target:  5'- cGCGGCGGuuACGAUUUUCCgucGAUa- -3'
miRNA:   3'- cCGCCGCCugUGCUAGAAGGa--CUGgu -5'
16199 3' -56.2 NC_004065.1 + 223231 0.67 0.923191
Target:  5'- aGCGGC-GACGCGGUCUUCUgGAa-- -3'
miRNA:   3'- cCGCCGcCUGUGCUAGAAGGaCUggu -5'
16199 3' -56.2 NC_004065.1 + 211905 0.7 0.839591
Target:  5'- cGCGGCGGGCcCGGagguUCUUCCgcgacagagaugccGGCCAc -3'
miRNA:   3'- cCGCCGCCUGuGCU----AGAAGGa-------------CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 211398 0.66 0.958815
Target:  5'- aGGUGGCGGAgGCGGgggaaacgugggCCUGGgCGg -3'
miRNA:   3'- -CCGCCGCCUgUGCUagaa--------GGACUgGU- -5'
16199 3' -56.2 NC_004065.1 + 208304 0.66 0.950948
Target:  5'- aGCGGCa---GCGAaacCUUCCUGACCu -3'
miRNA:   3'- cCGCCGccugUGCUa--GAAGGACUGGu -5'
16199 3' -56.2 NC_004065.1 + 205435 0.67 0.942576
Target:  5'- cGGCGGCGGugGCGG-CgacgacaCgcgcgGACCGc -3'
miRNA:   3'- -CCGCCGCCugUGCUaGaag----Ga----CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 202505 0.69 0.873177
Target:  5'- aGUGGUGGAggcacgcCGCGAugaaUCUggcgUCCUGACCGc -3'
miRNA:   3'- cCGCCGCCU-------GUGCU----AGA----AGGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 194858 1.11 0.003476
Target:  5'- cGGCGGCGGACACGAUCUUCCUGACCAg -3'
miRNA:   3'- -CCGCCGCCUGUGCUAGAAGGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 194825 0.67 0.928371
Target:  5'- uGGCGGUGGccgcCACGuUCU-CCaGGCCGa -3'
miRNA:   3'- -CCGCCGCCu---GUGCuAGAaGGaCUGGU- -5'
16199 3' -56.2 NC_004065.1 + 189593 0.68 0.887488
Target:  5'- aGCGGUGGugACauUCUUCCUG-UCGg -3'
miRNA:   3'- cCGCCGCCugUGcuAGAAGGACuGGU- -5'
16199 3' -56.2 NC_004065.1 + 188671 0.66 0.961905
Target:  5'- cGCGGCGGGagacgACGGUCgUCa-GGCCGa -3'
miRNA:   3'- cCGCCGCCUg----UGCUAGaAGgaCUGGU- -5'
16199 3' -56.2 NC_004065.1 + 188256 0.72 0.721185
Target:  5'- --aGGCGGACaggucgGCGGUCaUCUUGGCCAc -3'
miRNA:   3'- ccgCCGCCUG------UGCUAGaAGGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 187662 0.68 0.912165
Target:  5'- cGGCGGgguccaCGGGCACGAg---CCUGAUg- -3'
miRNA:   3'- -CCGCC------GCCUGUGCUagaaGGACUGgu -5'
16199 3' -56.2 NC_004065.1 + 186494 0.68 0.912165
Target:  5'- cGGa-GCgGGACGcCGAucgacUCUUCCUGGCCGc -3'
miRNA:   3'- -CCgcCG-CCUGU-GCU-----AGAAGGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 186118 0.72 0.692228
Target:  5'- uGGCGGCGcaucGACGCGAUC-UCC-GACUc -3'
miRNA:   3'- -CCGCCGC----CUGUGCUAGaAGGaCUGGu -5'
16199 3' -56.2 NC_004065.1 + 185311 0.66 0.950948
Target:  5'- -aCGuGCGGACaucGCGAacgaccgcagUCUUCCUGAUCu -3'
miRNA:   3'- ccGC-CGCCUG---UGCU----------AGAAGGACUGGu -5'
16199 3' -56.2 NC_004065.1 + 182345 0.68 0.912165
Target:  5'- aGGuCGGUGGACgACGAUuccgacgacgaCUgcgacaccagCCUGACCAc -3'
miRNA:   3'- -CC-GCCGCCUG-UGCUA-----------GAa---------GGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 176341 0.73 0.653003
Target:  5'- gGGCGGC-GACACGAUCaUCggaUGACUAu -3'
miRNA:   3'- -CCGCCGcCUGUGCUAGaAGg--ACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 175733 0.66 0.946871
Target:  5'- aGGUGGCGGAgACGAUUagaCUugaggaggaacGACCGg -3'
miRNA:   3'- -CCGCCGCCUgUGCUAGaagGA-----------CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 175246 0.67 0.933328
Target:  5'- cGCGGUugggaGGACAUGAcuUCUUCCgaACCGg -3'
miRNA:   3'- cCGCCG-----CCUGUGCU--AGAAGGacUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.