miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16199 3' -56.2 NC_004065.1 + 172270 0.69 0.844287
Target:  5'- cGGCGGCGGcgACgACGAUCUcucUCCUccCCu -3'
miRNA:   3'- -CCGCCGCC--UG-UGCUAGA---AGGAcuGGu -5'
16199 3' -56.2 NC_004065.1 + 168990 0.67 0.932842
Target:  5'- cGCGGCGGACcucggagGCGA-CaUCgUGGCCu -3'
miRNA:   3'- cCGCCGCCUG-------UGCUaGaAGgACUGGu -5'
16199 3' -56.2 NC_004065.1 + 167354 0.66 0.950948
Target:  5'- cGGCGGCaGACAgGGUCgcCgCUG-CCGu -3'
miRNA:   3'- -CCGCCGcCUGUgCUAGaaG-GACuGGU- -5'
16199 3' -56.2 NC_004065.1 + 165386 0.66 0.961905
Target:  5'- -aCGGCGGACgcGCGGUCga--UGGCCu -3'
miRNA:   3'- ccGCCGCCUG--UGCUAGaaggACUGGu -5'
16199 3' -56.2 NC_004065.1 + 162207 0.66 0.949343
Target:  5'- uGCGGCGG-CACGuccggcgcccgucUCUUCUUGcCCGa -3'
miRNA:   3'- cCGCCGCCuGUGCu------------AGAAGGACuGGU- -5'
16199 3' -56.2 NC_004065.1 + 160992 0.67 0.942576
Target:  5'- cGGCGGCGGGCugcugCUgcuaUCCgUGAUCAu -3'
miRNA:   3'- -CCGCCGCCUGugcuaGA----AGG-ACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 155367 0.69 0.844287
Target:  5'- -aCGGCGGACGCGccgCggUCCgGACCu -3'
miRNA:   3'- ccGCCGCCUGUGCua-Ga-AGGaCUGGu -5'
16199 3' -56.2 NC_004065.1 + 153356 0.7 0.836426
Target:  5'- cGGCGGCGccGACGCGAUCcgUUUCgaGCCGa -3'
miRNA:   3'- -CCGCCGC--CUGUGCUAG--AAGGacUGGU- -5'
16199 3' -56.2 NC_004065.1 + 152799 0.69 0.880787
Target:  5'- -uCGGUGGcCACGAUCagCgUGGCCAu -3'
miRNA:   3'- ccGCCGCCuGUGCUAGaaGgACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 151562 0.66 0.961905
Target:  5'- cGCGGCGcggaGACAUcAUCaUCCUcGACCGu -3'
miRNA:   3'- cCGCCGC----CUGUGcUAGaAGGA-CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 146634 0.68 0.887488
Target:  5'- cGGUGGUGaacgccguCACGggCUUCCUGACgAa -3'
miRNA:   3'- -CCGCCGCcu------GUGCuaGAAGGACUGgU- -5'
16199 3' -56.2 NC_004065.1 + 145990 0.7 0.820192
Target:  5'- -aUGGCGGACGCcGUCUcgaUCgaGACCAg -3'
miRNA:   3'- ccGCCGCCUGUGcUAGA---AGgaCUGGU- -5'
16199 3' -56.2 NC_004065.1 + 144374 0.72 0.692228
Target:  5'- cGGCgcuGGCGGugACGAUCUggugccUCCUuGCCu -3'
miRNA:   3'- -CCG---CCGCCugUGCUAGA------AGGAcUGGu -5'
16199 3' -56.2 NC_004065.1 + 143268 0.72 0.721185
Target:  5'- cGCGGCGGGgGCGGcagCUUCaagGGCCGa -3'
miRNA:   3'- cCGCCGCCUgUGCUa--GAAGga-CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 142790 0.66 0.965145
Target:  5'- uGGCGcCGGGgGCGGccaUCUUCgaGAUCAa -3'
miRNA:   3'- -CCGCcGCCUgUGCU---AGAAGgaCUGGU- -5'
16199 3' -56.2 NC_004065.1 + 142479 0.69 0.876666
Target:  5'- gGGCGGUGGACGCGAgccaggggguggcggUCUgucgacggcUCUUGuCCc -3'
miRNA:   3'- -CCGCCGCCUGUGCU---------------AGA---------AGGACuGGu -5'
16199 3' -56.2 NC_004065.1 + 138557 0.66 0.954811
Target:  5'- cGGCGGCGGACugacggcgACGGUgCcgUCCgcuCCGg -3'
miRNA:   3'- -CCGCCGCCUG--------UGCUA-Ga-AGGacuGGU- -5'
16199 3' -56.2 NC_004065.1 + 138301 0.66 0.958462
Target:  5'- aGGCcGUGGACGCGGc---CCUGAUCGc -3'
miRNA:   3'- -CCGcCGCCUGUGCUagaaGGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 138247 0.66 0.965145
Target:  5'- -aUGGCGGACgACGAUCUcuccagCCUcGCCc -3'
miRNA:   3'- ccGCCGCCUG-UGCUAGAa-----GGAcUGGu -5'
16199 3' -56.2 NC_004065.1 + 136687 0.7 0.828392
Target:  5'- cGGCGGCGGGCcggcuCGAgCUUUUauccgccacgaUGACCAu -3'
miRNA:   3'- -CCGCCGCCUGu----GCUaGAAGG-----------ACUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.