Results 41 - 60 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16199 | 3' | -56.2 | NC_004065.1 | + | 134036 | 0.66 | 0.961905 |
Target: 5'- uGGCGGCGGAggcUGCGAUaugaggaaCUUGugCAa -3' miRNA: 3'- -CCGCCGCCU---GUGCUAgaa-----GGACugGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 132337 | 0.69 | 0.873879 |
Target: 5'- cGGCGGCGGcagcgacCGCGAguaUCacaUCCUGcGCCAg -3' miRNA: 3'- -CCGCCGCCu------GUGCU---AGa--AGGAC-UGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 132024 | 0.66 | 0.950948 |
Target: 5'- cGGCGGUGGugaccCACGA-CgaaCUGAUCAa -3' miRNA: 3'- -CCGCCGCCu----GUGCUaGaagGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 131869 | 0.7 | 0.811832 |
Target: 5'- aGGCGGCGGugGCGGcggcgacuaUCaccgCCaGACCu -3' miRNA: 3'- -CCGCCGCCugUGCU---------AGaa--GGaCUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 130175 | 0.7 | 0.803321 |
Target: 5'- cGGCGGCgaucgGGGCGCaGAcgCUgaaacgCCUGGCCGg -3' miRNA: 3'- -CCGCCG-----CCUGUG-CUa-GAa-----GGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 129896 | 0.72 | 0.721185 |
Target: 5'- uGCGGCGGACccUGAUCggggCCUGGCg- -3' miRNA: 3'- cCGCCGCCUGu-GCUAGaa--GGACUGgu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 128457 | 0.67 | 0.928371 |
Target: 5'- aGGCGuccGCGGGCGCGAUCaggcuaccaCUG-CCAg -3' miRNA: 3'- -CCGC---CGCCUGUGCUAGaag------GACuGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 123629 | 0.68 | 0.912165 |
Target: 5'- cGUGGUGGACAggaaccugaUGAUCacggUCCUGgACCGc -3' miRNA: 3'- cCGCCGCCUGU---------GCUAGa---AGGAC-UGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 120556 | 0.67 | 0.933328 |
Target: 5'- cGGCGGCGGucgGCGCGAgCgggCggGACCu -3' miRNA: 3'- -CCGCCGCC---UGUGCUaGaa-GgaCUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 118440 | 0.71 | 0.785874 |
Target: 5'- cGGCGGCGucCuCG-UCUUCCUcGGCCGg -3' miRNA: 3'- -CCGCCGCcuGuGCuAGAAGGA-CUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 115065 | 0.68 | 0.906321 |
Target: 5'- cGGCGcGCgcgaGGACGCGGccucggucggcUCUUC-UGACCAg -3' miRNA: 3'- -CCGC-CG----CCUGUGCU-----------AGAAGgACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 114834 | 0.7 | 0.836426 |
Target: 5'- cGCGGCGGcCACGGcCggaUCCagGGCCAu -3' miRNA: 3'- cCGCCGCCuGUGCUaGa--AGGa-CUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 114476 | 0.7 | 0.811832 |
Target: 5'- cGCGGCGGugGCGGUaCUUUC-GAUCc -3' miRNA: 3'- cCGCCGCCugUGCUA-GAAGGaCUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 109407 | 0.67 | 0.933328 |
Target: 5'- cGCGGCGGACGCcacgagcuacucGAUCcUCgUGcACCc -3' miRNA: 3'- cCGCCGCCUGUG------------CUAGaAGgAC-UGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 109199 | 0.69 | 0.844287 |
Target: 5'- cGGCGGCGGcGCcuCGGccUCUUCCUGcUCGg -3' miRNA: 3'- -CCGCCGCC-UGu-GCU--AGAAGGACuGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 106269 | 0.66 | 0.946871 |
Target: 5'- cGGCGcGCGGcgcaccgagguGCugGAcucggaggccaUCUcgaUCCUGACCu -3' miRNA: 3'- -CCGC-CGCC-----------UGugCU-----------AGA---AGGACUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 103136 | 0.69 | 0.859465 |
Target: 5'- cGGCGGCucACGCGAUCaugUUCCacGACCu -3' miRNA: 3'- -CCGCCGccUGUGCUAG---AAGGa-CUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 99403 | 0.76 | 0.488631 |
Target: 5'- uGGCGGCGGGCGCGuugCUggagaUCUUGACa- -3' miRNA: 3'- -CCGCCGCCUGUGCua-GA-----AGGACUGgu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 95923 | 0.69 | 0.86677 |
Target: 5'- gGGC-GCGGACGCGAUCUga--GGCUAg -3' miRNA: 3'- -CCGcCGCCUGUGCUAGAaggaCUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 94738 | 0.79 | 0.369089 |
Target: 5'- cGGCGGCGGAgACGcgUUUcagcgcgaaCCUGGCCAg -3' miRNA: 3'- -CCGCCGCCUgUGCuaGAA---------GGACUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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