Results 81 - 96 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16199 | 3' | -56.2 | NC_004065.1 | + | 42238 | 0.72 | 0.711593 |
Target: 5'- cGGCGGgGGGCGCGAUagggggugUCUGAUCu -3' miRNA: 3'- -CCGCCgCCUGUGCUAgaa-----GGACUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 40640 | 0.72 | 0.7439 |
Target: 5'- cGGCGaCGGugacgccgaacgGCACGAUCUUgcuucacgacaacuaCCUGACCAc -3' miRNA: 3'- -CCGCcGCC------------UGUGCUAGAA---------------GGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 38336 | 0.66 | 0.961905 |
Target: 5'- gGGUGGUGGGCugGGUCaaaugUUCgGGCg- -3' miRNA: 3'- -CCGCCGCCUGugCUAGa----AGGaCUGgu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 37873 | 0.69 | 0.844287 |
Target: 5'- cGGCGGUGaucGGCACGAUgUUCCgcACCu -3' miRNA: 3'- -CCGCCGC---CUGUGCUAgAAGGacUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 32972 | 0.66 | 0.950948 |
Target: 5'- cGCGGCGGAgCAUGA-CggaggCCUcgcgGACCAg -3' miRNA: 3'- cCGCCGCCU-GUGCUaGaa---GGA----CUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 29715 | 0.69 | 0.847381 |
Target: 5'- aGCGGCGGACGCcgcccaggacgaugaGAUCcUCCgGACa- -3' miRNA: 3'- cCGCCGCCUGUG---------------CUAGaAGGaCUGgu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 29603 | 0.67 | 0.933328 |
Target: 5'- cGCGGUccugcaGGACuucGCGGacaUCUUCCUGGCgCAg -3' miRNA: 3'- cCGCCG------CCUG---UGCU---AGAAGGACUG-GU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 28995 | 0.7 | 0.811832 |
Target: 5'- cGGCGGCGGugGCGAggcgccgcgcgcacgCggCCUcgagucaGACCGg -3' miRNA: 3'- -CCGCCGCCugUGCUa--------------GaaGGA-------CUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 28745 | 0.76 | 0.516595 |
Target: 5'- cGGUGGCGGACGC---CUUCCUGcGCCu -3' miRNA: 3'- -CCGCCGCCUGUGcuaGAAGGAC-UGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 16610 | 0.67 | 0.938063 |
Target: 5'- cGCuGCGGACGCGAUCU-CUUcGGCg- -3' miRNA: 3'- cCGcCGCCUGUGCUAGAaGGA-CUGgu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 8761 | 0.7 | 0.794666 |
Target: 5'- uGGCGGCGG-CAgGGUUcauaUCCUGGCa- -3' miRNA: 3'- -CCGCCGCCuGUgCUAGa---AGGACUGgu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 8325 | 0.69 | 0.851969 |
Target: 5'- cGGUaGCGGugACGAUCUUuauagugacUCUGAUCGc -3' miRNA: 3'- -CCGcCGCCugUGCUAGAA---------GGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 6509 | 0.7 | 0.803321 |
Target: 5'- cGCGGCcGGCACuaGAUCc-CCUGACCGg -3' miRNA: 3'- cCGCCGcCUGUG--CUAGaaGGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 5705 | 0.66 | 0.954811 |
Target: 5'- cGUGGCGGGacuCGGga-UCCUGGCCc -3' miRNA: 3'- cCGCCGCCUgu-GCUagaAGGACUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 4689 | 0.69 | 0.880787 |
Target: 5'- cGGCGGCGGACacuaACGAUCcgggaUGGCg- -3' miRNA: 3'- -CCGCCGCCUG----UGCUAGaagg-ACUGgu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 4412 | 0.67 | 0.923191 |
Target: 5'- aGCGGUGGcCACGG-CgggCCUGACg- -3' miRNA: 3'- cCGCCGCCuGUGCUaGaa-GGACUGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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