miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16199 3' -56.2 NC_004065.1 + 186494 0.68 0.912165
Target:  5'- cGGa-GCgGGACGcCGAucgacUCUUCCUGGCCGc -3'
miRNA:   3'- -CCgcCG-CCUGU-GCU-----AGAAGGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 8325 0.69 0.851969
Target:  5'- cGGUaGCGGugACGAUCUUuauagugacUCUGAUCGc -3'
miRNA:   3'- -CCGcCGCCugUGCUAGAA---------GGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 95923 0.69 0.86677
Target:  5'- gGGC-GCGGACGCGAUCUga--GGCUAg -3'
miRNA:   3'- -CCGcCGCCUGUGCUAGAaggaCUGGU- -5'
16199 3' -56.2 NC_004065.1 + 189593 0.68 0.887488
Target:  5'- aGCGGUGGugACauUCUUCCUG-UCGg -3'
miRNA:   3'- cCGCCGCCugUGcuAGAAGGACuGGU- -5'
16199 3' -56.2 NC_004065.1 + 82141 0.68 0.887488
Target:  5'- cGGCGGCgcGGACGCuGUaccUCCUGGCgAg -3'
miRNA:   3'- -CCGCCG--CCUGUGcUAga-AGGACUGgU- -5'
16199 3' -56.2 NC_004065.1 + 61718 0.68 0.89398
Target:  5'- aGCGGCGGAUGCGAgccaugcgCUcCUUGGCgGg -3'
miRNA:   3'- cCGCCGCCUGUGCUa-------GAaGGACUGgU- -5'
16199 3' -56.2 NC_004065.1 + 48107 0.68 0.89398
Target:  5'- cGGCGGCGGugGCGGcggCgguggGACCu -3'
miRNA:   3'- -CCGCCGCCugUGCUa--GaaggaCUGGu -5'
16199 3' -56.2 NC_004065.1 + 115065 0.68 0.906321
Target:  5'- cGGCGcGCgcgaGGACGCGGccucggucggcUCUUC-UGACCAg -3'
miRNA:   3'- -CCGC-CG----CCUGUGCU-----------AGAAGgACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 187662 0.68 0.912165
Target:  5'- cGGCGGgguccaCGGGCACGAg---CCUGAUg- -3'
miRNA:   3'- -CCGCC------GCCUGUGCUagaaGGACUGgu -5'
16199 3' -56.2 NC_004065.1 + 29715 0.69 0.847381
Target:  5'- aGCGGCGGACGCcgcccaggacgaugaGAUCcUCCgGACa- -3'
miRNA:   3'- cCGCCGCCUGUG---------------CUAGaAGGaCUGgu -5'
16199 3' -56.2 NC_004065.1 + 109199 0.69 0.844287
Target:  5'- cGGCGGCGGcGCcuCGGccUCUUCCUGcUCGg -3'
miRNA:   3'- -CCGCCGCC-UGu-GCU--AGAAGGACuGGU- -5'
16199 3' -56.2 NC_004065.1 + 37873 0.69 0.844287
Target:  5'- cGGCGGUGaucGGCACGAUgUUCCgcACCu -3'
miRNA:   3'- -CCGCCGC---CUGUGCUAgAAGGacUGGu -5'
16199 3' -56.2 NC_004065.1 + 71047 0.74 0.633267
Target:  5'- cGGCGGgGaGGCACGAUacaagaucCUgagcgacgcgaUCCUGACCAa -3'
miRNA:   3'- -CCGCCgC-CUGUGCUA--------GA-----------AGGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 75596 0.73 0.672677
Target:  5'- cGGCGGgGGgaggccGCugGGUCUggUCCUGAUCc -3'
miRNA:   3'- -CCGCCgCC------UGugCUAGA--AGGACUGGu -5'
16199 3' -56.2 NC_004065.1 + 188256 0.72 0.721185
Target:  5'- --aGGCGGACaggucgGCGGUCaUCUUGGCCAc -3'
miRNA:   3'- ccgCCGCCUG------UGCUAGaAGGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 118440 0.71 0.785874
Target:  5'- cGGCGGCGucCuCG-UCUUCCUcGGCCGg -3'
miRNA:   3'- -CCGCCGCcuGuGCuAGAAGGA-CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 63561 0.7 0.794666
Target:  5'- uGGCGGCGGAgACG---UUCUcGGCCAc -3'
miRNA:   3'- -CCGCCGCCUgUGCuagAAGGaCUGGU- -5'
16199 3' -56.2 NC_004065.1 + 75669 0.7 0.803321
Target:  5'- cGGCgaGGCGGcCGCGggCUgauUCUUGGCCGc -3'
miRNA:   3'- -CCG--CCGCCuGUGCuaGA---AGGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 114476 0.7 0.811832
Target:  5'- cGCGGCGGugGCGGUaCUUUC-GAUCc -3'
miRNA:   3'- cCGCCGCCugUGCUA-GAAGGaCUGGu -5'
16199 3' -56.2 NC_004065.1 + 145990 0.7 0.820192
Target:  5'- -aUGGCGGACGCcGUCUcgaUCgaGACCAg -3'
miRNA:   3'- ccGCCGCCUGUGcUAGA---AGgaCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.