miRNA display CGI


Results 81 - 96 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16199 3' -56.2 NC_004065.1 + 8761 0.7 0.794666
Target:  5'- uGGCGGCGG-CAgGGUUcauaUCCUGGCa- -3'
miRNA:   3'- -CCGCCGCCuGUgCUAGa---AGGACUGgu -5'
16199 3' -56.2 NC_004065.1 + 224195 0.7 0.794666
Target:  5'- cGCGGCGGuuACGAUUUUCCgucGAUa- -3'
miRNA:   3'- cCGCCGCCugUGCUAGAAGGa--CUGgu -5'
16199 3' -56.2 NC_004065.1 + 130175 0.7 0.803321
Target:  5'- cGGCGGCgaucgGGGCGCaGAcgCUgaaacgCCUGGCCGg -3'
miRNA:   3'- -CCGCCG-----CCUGUG-CUa-GAa-----GGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 65186 0.69 0.873177
Target:  5'- aGCGGCGGccauCGCGGUUUccUCCUcggaaacGGCCAg -3'
miRNA:   3'- cCGCCGCCu---GUGCUAGA--AGGA-------CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 103136 0.69 0.859465
Target:  5'- cGGCGGCucACGCGAUCaugUUCCacGACCu -3'
miRNA:   3'- -CCGCCGccUGUGCUAG---AAGGa-CUGGu -5'
16199 3' -56.2 NC_004065.1 + 172270 0.69 0.844287
Target:  5'- cGGCGGCGGcgACgACGAUCUcucUCCUccCCu -3'
miRNA:   3'- -CCGCCGCC--UG-UGCUAGA---AGGAcuGGu -5'
16199 3' -56.2 NC_004065.1 + 155367 0.69 0.844287
Target:  5'- -aCGGCGGACGCGccgCggUCCgGACCu -3'
miRNA:   3'- ccGCCGCCUGUGCua-Ga-AGGaCUGGu -5'
16199 3' -56.2 NC_004065.1 + 70959 0.69 0.844287
Target:  5'- cGCGGCGGuCGguccaGAUCgcgaUUCUGACCAc -3'
miRNA:   3'- cCGCCGCCuGUg----CUAGa---AGGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 211905 0.7 0.839591
Target:  5'- cGCGGCGGGCcCGGagguUCUUCCgcgacagagaugccGGCCAc -3'
miRNA:   3'- cCGCCGCCUGuGCU----AGAAGGa-------------CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 153356 0.7 0.836426
Target:  5'- cGGCGGCGccGACGCGAUCcgUUUCgaGCCGa -3'
miRNA:   3'- -CCGCCGC--CUGUGCUAG--AAGGacUGGU- -5'
16199 3' -56.2 NC_004065.1 + 114834 0.7 0.836426
Target:  5'- cGCGGCGGcCACGGcCggaUCCagGGCCAu -3'
miRNA:   3'- cCGCCGCCuGUGCUaGa--AGGa-CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 136687 0.7 0.828392
Target:  5'- cGGCGGCGGGCcggcuCGAgCUUUUauccgccacgaUGACCAu -3'
miRNA:   3'- -CCGCCGCCUGu----GCUaGAAGG-----------ACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 28995 0.7 0.811832
Target:  5'- cGGCGGCGGugGCGAggcgccgcgcgcacgCggCCUcgagucaGACCGg -3'
miRNA:   3'- -CCGCCGCCugUGCUa--------------GaaGGA-------CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 131869 0.7 0.811832
Target:  5'- aGGCGGCGGugGCGGcggcgacuaUCaccgCCaGACCu -3'
miRNA:   3'- -CCGCCGCCugUGCU---------AGaa--GGaCUGGu -5'
16199 3' -56.2 NC_004065.1 + 6509 0.7 0.803321
Target:  5'- cGCGGCcGGCACuaGAUCc-CCUGACCGg -3'
miRNA:   3'- cCGCCGcCUGUG--CUAGaaGGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 68512 0.79 0.361346
Target:  5'- aGGCGGCGGACGC-AUCUcCCggaGGCCGa -3'
miRNA:   3'- -CCGCCGCCUGUGcUAGAaGGa--CUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.